Results 1 - 20 of 378 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16115 | 5' | -64.1 | NC_004065.1 | + | 125125 | 1.11 | 0.000716 |
Target: 5'- cCGGCACCACCGCGCCGUCGCCCAGCCg -3' miRNA: 3'- -GCCGUGGUGGCGCGGCAGCGGGUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 101615 | 0.87 | 0.038357 |
Target: 5'- gCGGCGCCGCCGcCGCUGcCGCUCGGCCc -3' miRNA: 3'- -GCCGUGGUGGC-GCGGCaGCGGGUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 63475 | 0.85 | 0.04921 |
Target: 5'- cCGGUgcaGCCGCCagGCGCCGUCGCgCAGCCa -3' miRNA: 3'- -GCCG---UGGUGG--CGCGGCAGCGgGUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 90168 | 0.84 | 0.055707 |
Target: 5'- cCGGCuCCGCCGCcuccGCCGUCGCCC-GCCu -3' miRNA: 3'- -GCCGuGGUGGCG----CGGCAGCGGGuCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 88382 | 0.84 | 0.061496 |
Target: 5'- gCGGCaccGCCACCGCccuCCGUCGCCgAGCCg -3' miRNA: 3'- -GCCG---UGGUGGCGc--GGCAGCGGgUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 127485 | 0.81 | 0.097866 |
Target: 5'- cCGGCGCCACCgacgaggacaagGCGCgCGUCGUCCucuGCCg -3' miRNA: 3'- -GCCGUGGUGG------------CGCG-GCAGCGGGu--CGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 76380 | 0.8 | 0.100018 |
Target: 5'- cCGGCGCCGCCGCggaugagcucgccGCCGUccgaguggcgcCGCCCgAGCCg -3' miRNA: 3'- -GCCGUGGUGGCG-------------CGGCA-----------GCGGG-UCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 200006 | 0.8 | 0.102462 |
Target: 5'- cCGuCACCACCGCGCCGgugacggUCGCgCAGCCu -3' miRNA: 3'- -GCcGUGGUGGCGCGGC-------AGCGgGUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 80973 | 0.8 | 0.105216 |
Target: 5'- uCGGCcuGCCGCCGcCGUCGUCGCCCgcucccgaggucAGCCc -3' miRNA: 3'- -GCCG--UGGUGGC-GCGGCAGCGGG------------UCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 151359 | 0.79 | 0.11863 |
Target: 5'- gGGCGCCGCgGCGCCGgccgcugCGCUggCGGCCg -3' miRNA: 3'- gCCGUGGUGgCGCGGCa------GCGG--GUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 194464 | 0.79 | 0.127427 |
Target: 5'- gGGCACgGCgGCGCCGcCGCUCAcGCCu -3' miRNA: 3'- gCCGUGgUGgCGCGGCaGCGGGU-CGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 135634 | 0.79 | 0.130491 |
Target: 5'- aCGGCGCCACCa-GCCGacagcUCGCCgCGGCCg -3' miRNA: 3'- -GCCGUGGUGGcgCGGC-----AGCGG-GUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 112610 | 0.79 | 0.130491 |
Target: 5'- uCGGCuGCCAcuCCGCGCCGcgaGCCCAGCg -3' miRNA: 3'- -GCCG-UGGU--GGCGCGGCag-CGGGUCGg -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 109872 | 0.78 | 0.140095 |
Target: 5'- gCGGUGCCACCG-G-CGUCGCCgCGGCCg -3' miRNA: 3'- -GCCGUGGUGGCgCgGCAGCGG-GUCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 133258 | 0.78 | 0.143438 |
Target: 5'- aCGGCcgcgauGCCGCCucCGCCGUCGCCCuGCUc -3' miRNA: 3'- -GCCG------UGGUGGc-GCGGCAGCGGGuCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 110022 | 0.78 | 0.143438 |
Target: 5'- cCGGCACCGCC-CGCCGUguucuuccaccCGCUCGGCg -3' miRNA: 3'- -GCCGUGGUGGcGCGGCA-----------GCGGGUCGg -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 158072 | 0.78 | 0.153548 |
Target: 5'- cCGGCuCCACCgGCGgCGUCGCCUccgaccaGGCCa -3' miRNA: 3'- -GCCGuGGUGG-CGCgGCAGCGGG-------UCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 90121 | 0.78 | 0.153908 |
Target: 5'- uGGCGCCGCCG-GCCGgagGCCCcgcGGCCa -3' miRNA: 3'- gCCGUGGUGGCgCGGCag-CGGG---UCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 225650 | 0.77 | 0.161268 |
Target: 5'- cCGGCucCCGCCGcCGCCGUCGCgCUccacgcgcAGCCg -3' miRNA: 3'- -GCCGu-GGUGGC-GCGGCAGCG-GG--------UCGG- -5' |
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16115 | 5' | -64.1 | NC_004065.1 | + | 4635 | 0.77 | 0.165066 |
Target: 5'- gCGGCACCAUCaGCGCCaG-CGCCCccGCCg -3' miRNA: 3'- -GCCGUGGUGG-CGCGG-CaGCGGGu-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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