miRNA display CGI


Results 21 - 40 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 5' -64.1 NC_004065.1 + 158005 0.66 0.68615
Target:  5'- -aGCGCCGCCaucaGCGUCGagaaGUCCAGCa -3'
miRNA:   3'- gcCGUGGUGG----CGCGGCag--CGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 98727 0.66 0.68615
Target:  5'- ---gACCACCuugaCGCCGUCGCUCA-CCa -3'
miRNA:   3'- gccgUGGUGGc---GCGGCAGCGGGUcGG- -5'
16115 5' -64.1 NC_004065.1 + 35661 0.66 0.68615
Target:  5'- cCGGcCGCCgAUCGC-CaCGUCGCUCgcgAGCCa -3'
miRNA:   3'- -GCC-GUGG-UGGCGcG-GCAGCGGG---UCGG- -5'
16115 5' -64.1 NC_004065.1 + 199156 0.66 0.68615
Target:  5'- gGGCGCUcgaACC-CGCCGUCGacaGGCUg -3'
miRNA:   3'- gCCGUGG---UGGcGCGGCAGCgggUCGG- -5'
16115 5' -64.1 NC_004065.1 + 184036 0.66 0.68615
Target:  5'- aCGcCGCCACgGCGCCcagGUCGCCguuacacaCGGCg -3'
miRNA:   3'- -GCcGUGGUGgCGCGG---CAGCGG--------GUCGg -5'
16115 5' -64.1 NC_004065.1 + 132425 0.66 0.683368
Target:  5'- gCGGCgGCgGCCuccuucgacguguuGCGCCGUCcGCCCcuGUCu -3'
miRNA:   3'- -GCCG-UGgUGG--------------CGCGGCAG-CGGGu-CGG- -5'
16115 5' -64.1 NC_004065.1 + 114069 0.66 0.676865
Target:  5'- uGGaCGCCGacaaCGUGCCGUCGgaCCAGg- -3'
miRNA:   3'- gCC-GUGGUg---GCGCGGCAGCg-GGUCgg -5'
16115 5' -64.1 NC_004065.1 + 66943 0.66 0.676865
Target:  5'- uCGGUGCgGCCcuCGCCGuUCGUgCAGUCc -3'
miRNA:   3'- -GCCGUGgUGGc-GCGGC-AGCGgGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 151443 0.66 0.676865
Target:  5'- -uGC-CCGCCGuCGCUGUUGCCaCuGUCg -3'
miRNA:   3'- gcCGuGGUGGC-GCGGCAGCGG-GuCGG- -5'
16115 5' -64.1 NC_004065.1 + 191475 0.66 0.676865
Target:  5'- gCGGCACCACCaCGCaCGcgUGUCCccCCa -3'
miRNA:   3'- -GCCGUGGUGGcGCG-GCa-GCGGGucGG- -5'
16115 5' -64.1 NC_004065.1 + 27288 0.66 0.676865
Target:  5'- gCGGCGCCGCCGaCGaCG-CGUCUAucGUCg -3'
miRNA:   3'- -GCCGUGGUGGC-GCgGCaGCGGGU--CGG- -5'
16115 5' -64.1 NC_004065.1 + 88345 0.66 0.675935
Target:  5'- -cGCGCCAuaggcucCCGCauGUCGUCgcuGCCCAGCa -3'
miRNA:   3'- gcCGUGGU-------GGCG--CGGCAG---CGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 14696 0.66 0.671279
Target:  5'- aCGGauccaCACCGCCacccaucagauccaCGCCGUCaCCCAGCa -3'
miRNA:   3'- -GCC-----GUGGUGGc-------------GCGGCAGcGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 90407 0.66 0.66755
Target:  5'- --aCGCCACCGCuCCGcaucugCGCCUuGCCa -3'
miRNA:   3'- gccGUGGUGGCGcGGCa-----GCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 199556 0.66 0.66755
Target:  5'- gGGCGcgccCCAUCGUGCCG-CGgUCCAgacGCCg -3'
miRNA:   3'- gCCGU----GGUGGCGCGGCaGC-GGGU---CGG- -5'
16115 5' -64.1 NC_004065.1 + 53853 0.66 0.66755
Target:  5'- --cCGCCGCCGuCGCCaUCGUCuCAGCa -3'
miRNA:   3'- gccGUGGUGGC-GCGGcAGCGG-GUCGg -5'
16115 5' -64.1 NC_004065.1 + 45808 0.66 0.66755
Target:  5'- uGGCGCCacacGCCGCGUgCGggugggcauguaUCGgaCCGGCCg -3'
miRNA:   3'- gCCGUGG----UGGCGCG-GC------------AGCg-GGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 161931 0.66 0.66755
Target:  5'- -uGCACCGCCGacuCGuCCGUCGUCUuGUCc -3'
miRNA:   3'- gcCGUGGUGGC---GC-GGCAGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 141074 0.66 0.66755
Target:  5'- uGGCACUACgCGgGCC--UGgCCAGCUa -3'
miRNA:   3'- gCCGUGGUG-GCgCGGcaGCgGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 171823 0.66 0.66755
Target:  5'- gGGCuuugACCGCaUGC-CCGUCGCCaaCAGCa -3'
miRNA:   3'- gCCG----UGGUG-GCGcGGCAGCGG--GUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.