miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 5' -64.1 NC_004065.1 + 523 0.68 0.541024
Target:  5'- aGGCGCCccGCCaGCGUgugaagcuuccgcgaCGagcggCGCCCGGCCc -3'
miRNA:   3'- gCCGUGG--UGG-CGCG---------------GCa----GCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 4635 0.77 0.165066
Target:  5'- gCGGCACCAUCaGCGCCaG-CGCCCccGCCg -3'
miRNA:   3'- -GCCGUGGUGG-CGCGG-CaGCGGGu-CGG- -5'
16115 5' -64.1 NC_004065.1 + 4859 0.67 0.630113
Target:  5'- --cCACCACCGcCGCCcUCGgCUCGGUCa -3'
miRNA:   3'- gccGUGGUGGC-GCGGcAGC-GGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 5223 0.67 0.592694
Target:  5'- aCGGCGgUcgugACCGUGCUGcCGCCC-GCUc -3'
miRNA:   3'- -GCCGUgG----UGGCGCGGCaGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 13148 0.66 0.658211
Target:  5'- -cGCGCCGCCGCGaacgaCCGUCaaaCCGGUg -3'
miRNA:   3'- gcCGUGGUGGCGC-----GGCAGcg-GGUCGg -5'
16115 5' -64.1 NC_004065.1 + 14696 0.66 0.671279
Target:  5'- aCGGauccaCACCGCCacccaucagauccaCGCCGUCaCCCAGCa -3'
miRNA:   3'- -GCC-----GUGGUGGc-------------GCGGCAGcGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 17678 0.7 0.449802
Target:  5'- aCGGUcguCCGUCGCGCCaUCGCCgUGGCCg -3'
miRNA:   3'- -GCCGu--GGUGGCGCGGcAGCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 18078 0.68 0.528326
Target:  5'- gCGGCagcgACCGCCGCaGCC-UCGUggCCGGCa -3'
miRNA:   3'- -GCCG----UGGUGGCG-CGGcAGCG--GGUCGg -5'
16115 5' -64.1 NC_004065.1 + 18468 0.69 0.501508
Target:  5'- aCGGUgACCAUCGCGaucaCCGUCGCCgCAuucGUCg -3'
miRNA:   3'- -GCCG-UGGUGGCGC----GGCAGCGG-GU---CGG- -5'
16115 5' -64.1 NC_004065.1 + 18487 0.67 0.621679
Target:  5'- aGGUACCAacgacgggGCGUCGUCGCCaccgacgacccucagAGCCg -3'
miRNA:   3'- gCCGUGGUgg------CGCGGCAGCGGg--------------UCGG- -5'
16115 5' -64.1 NC_004065.1 + 23272 0.69 0.519324
Target:  5'- gCGGUACgACUgGCGcCCGUaGCCgCGGCCu -3'
miRNA:   3'- -GCCGUGgUGG-CGC-GGCAgCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 24494 0.75 0.212397
Target:  5'- uGGCACCGCCGCcgGCCcugaGCgCCGGCCc -3'
miRNA:   3'- gCCGUGGUGGCG--CGGcag-CG-GGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 24581 0.69 0.475304
Target:  5'- gCGGU-CCGCgCGUGUCGUCGCC--GCCa -3'
miRNA:   3'- -GCCGuGGUG-GCGCGGCAGCGGguCGG- -5'
16115 5' -64.1 NC_004065.1 + 26478 0.72 0.327963
Target:  5'- aCGGCACCGCaaauaCGCGCCGUUGUUUugGGaCCg -3'
miRNA:   3'- -GCCGUGGUG-----GCGCGGCAGCGGG--UC-GG- -5'
16115 5' -64.1 NC_004065.1 + 27288 0.66 0.676865
Target:  5'- gCGGCGCCGCCGaCGaCG-CGUCUAucGUCg -3'
miRNA:   3'- -GCCGUGGUGGC-GCgGCaGCGGGU--CGG- -5'
16115 5' -64.1 NC_004065.1 + 27401 0.68 0.583385
Target:  5'- gCGGCGgCAUCGuCGUCGacuccucaUCGCacCCAGCCu -3'
miRNA:   3'- -GCCGUgGUGGC-GCGGC--------AGCG--GGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 27636 0.67 0.592694
Target:  5'- aGGCGCUgcGCUGCGCgGgggUGCUgCGGCCc -3'
miRNA:   3'- gCCGUGG--UGGCGCGgCa--GCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 27777 0.76 0.206246
Target:  5'- -uGCGCCGCCGUcuggagggccuccuGCCccagcagacGUCGCCCAGCCc -3'
miRNA:   3'- gcCGUGGUGGCG--------------CGG---------CAGCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 28338 0.69 0.501508
Target:  5'- gGGC-CUGuCCGCGuuGUgcCGCCgCAGCCu -3'
miRNA:   3'- gCCGuGGU-GGCGCggCA--GCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 28823 0.69 0.510384
Target:  5'- -cGCACguCGCCGCGCCG-C-CCgAGCCg -3'
miRNA:   3'- gcCGUG--GUGGCGCGGCaGcGGgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.