miRNA display CGI


Results 1 - 20 of 378 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16115 5' -64.1 NC_004065.1 + 124466 0.75 0.242854
Target:  5'- aCGGCG-CGCCGUGCCGcugCGCCgGGUCc -3'
miRNA:   3'- -GCCGUgGUGGCGCGGCa--GCGGgUCGG- -5'
16115 5' -64.1 NC_004065.1 + 43665 0.77 0.181071
Target:  5'- -cGCAUCACCGCgaaacgacaauGCCGUCGUCCGcGCCg -3'
miRNA:   3'- gcCGUGGUGGCG-----------CGGCAGCGGGU-CGG- -5'
16115 5' -64.1 NC_004065.1 + 195248 0.76 0.193963
Target:  5'- aGuGCACCACCGCgGCCGcgaucUgGCCCGGCg -3'
miRNA:   3'- gC-CGUGGUGGCG-CGGC-----AgCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 149236 0.76 0.193963
Target:  5'- cCGcCGCCGCCGcCGCCGUCGCCU-GCUc -3'
miRNA:   3'- -GCcGUGGUGGC-GCGGCAGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 27777 0.76 0.206246
Target:  5'- -uGCGCCGCCGUcuggagggccuccuGCCccagcagacGUCGCCCAGCCc -3'
miRNA:   3'- gcCGUGGUGGCG--------------CGG---------CAGCGGGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 24494 0.75 0.212397
Target:  5'- uGGCACCGCCGCcgGCCcugaGCgCCGGCCc -3'
miRNA:   3'- gCCGUGGUGGCG--CGGcag-CG-GGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 110187 0.75 0.237536
Target:  5'- gCGGCgGCCGCgaCGCGCCGcCGCCC-GUCg -3'
miRNA:   3'- -GCCG-UGGUG--GCGCGGCaGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 163383 0.75 0.242318
Target:  5'- gGGCGcCCACCGCGCCGaaGCCgAcgaugucGCCg -3'
miRNA:   3'- gCCGU-GGUGGCGCGGCagCGGgU-------CGG- -5'
16115 5' -64.1 NC_004065.1 + 34991 0.75 0.242854
Target:  5'- aGGCACC-UCGaCGUCGUCGCCC-GUCg -3'
miRNA:   3'- gCCGUGGuGGC-GCGGCAGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 146579 0.77 0.176946
Target:  5'- aGGUGCCGCuCGUGCCGgaGCCCGGCa -3'
miRNA:   3'- gCCGUGGUG-GCGCGGCagCGGGUCGg -5'
16115 5' -64.1 NC_004065.1 + 225650 0.77 0.161268
Target:  5'- cCGGCucCCGCCGcCGCCGUCGCgCUccacgcgcAGCCg -3'
miRNA:   3'- -GCCGu-GGUGGC-GCGGCAGCG-GG--------UCGG- -5'
16115 5' -64.1 NC_004065.1 + 90121 0.78 0.153908
Target:  5'- uGGCGCCGCCG-GCCGgagGCCCcgcGGCCa -3'
miRNA:   3'- gCCGUGGUGGCgCGGCag-CGGG---UCGG- -5'
16115 5' -64.1 NC_004065.1 + 63475 0.85 0.04921
Target:  5'- cCGGUgcaGCCGCCagGCGCCGUCGCgCAGCCa -3'
miRNA:   3'- -GCCG---UGGUGG--CGCGGCAGCGgGUCGG- -5'
16115 5' -64.1 NC_004065.1 + 90168 0.84 0.055707
Target:  5'- cCGGCuCCGCCGCcuccGCCGUCGCCC-GCCu -3'
miRNA:   3'- -GCCGuGGUGGCG----CGGCAGCGGGuCGG- -5'
16115 5' -64.1 NC_004065.1 + 88382 0.84 0.061496
Target:  5'- gCGGCaccGCCACCGCccuCCGUCGCCgAGCCg -3'
miRNA:   3'- -GCCG---UGGUGGCGc--GGCAGCGGgUCGG- -5'
16115 5' -64.1 NC_004065.1 + 127485 0.81 0.097866
Target:  5'- cCGGCGCCACCgacgaggacaagGCGCgCGUCGUCCucuGCCg -3'
miRNA:   3'- -GCCGUGGUGG------------CGCG-GCAGCGGGu--CGG- -5'
16115 5' -64.1 NC_004065.1 + 76380 0.8 0.100018
Target:  5'- cCGGCGCCGCCGCggaugagcucgccGCCGUccgaguggcgcCGCCCgAGCCg -3'
miRNA:   3'- -GCCGUGGUGGCG-------------CGGCA-----------GCGGG-UCGG- -5'
16115 5' -64.1 NC_004065.1 + 194464 0.79 0.127427
Target:  5'- gGGCACgGCgGCGCCGcCGCUCAcGCCu -3'
miRNA:   3'- gCCGUGgUGgCGCGGCaGCGGGU-CGG- -5'
16115 5' -64.1 NC_004065.1 + 135634 0.79 0.130491
Target:  5'- aCGGCGCCACCa-GCCGacagcUCGCCgCGGCCg -3'
miRNA:   3'- -GCCGUGGUGGcgCGGC-----AGCGG-GUCGG- -5'
16115 5' -64.1 NC_004065.1 + 109872 0.78 0.140095
Target:  5'- gCGGUGCCACCG-G-CGUCGCCgCGGCCg -3'
miRNA:   3'- -GCCGUGGUGGCgCgGCAGCGG-GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.