miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 489 0.66 0.801131
Target:  5'- gGGCCGCgCGcCGCGUccGCGGGaaGGCg -3'
miRNA:   3'- -CCGGCGaGCcGUGCA--CGUCCggCUGg -5'
16116 3' -61.7 NC_004065.1 + 7 0.66 0.801131
Target:  5'- cGGCCGUcUGaGUGCGcGCGGGCCc-CCg -3'
miRNA:   3'- -CCGGCGaGC-CGUGCaCGUCCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 83378 0.66 0.792761
Target:  5'- uGCCuCaugUCGGCguaGUGCAGGUCGAUa -3'
miRNA:   3'- cCGGcG---AGCCGug-CACGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 209575 0.66 0.792761
Target:  5'- cGGCUGCU-GGCggGCGUGC-GGUCagGAUCa -3'
miRNA:   3'- -CCGGCGAgCCG--UGCACGuCCGG--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 169262 0.66 0.792761
Target:  5'- aGGCCGC--GGCccUGUGC-GGCCucGACCu -3'
miRNA:   3'- -CCGGCGagCCGu-GCACGuCCGG--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 200770 0.66 0.792761
Target:  5'- cGGUCGCUCucucgucGCGCGgcggugGCGGGCgaCGGCg -3'
miRNA:   3'- -CCGGCGAGc------CGUGCa-----CGUCCG--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 127226 0.66 0.792761
Target:  5'- cGGCCGCgaggaUCgGGCGCGgugGCGGGgaUGAUg -3'
miRNA:   3'- -CCGGCG-----AG-CCGUGCa--CGUCCg-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 25592 0.66 0.792761
Target:  5'- aGGCgGCUgaGCA---GCAGGCCGAUCu -3'
miRNA:   3'- -CCGgCGAgcCGUgcaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 57039 0.66 0.792761
Target:  5'- uGGCuCGUcgUCGGCACGacggGCAaGGCC--CCg -3'
miRNA:   3'- -CCG-GCG--AGCCGUGCa---CGU-CCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 31098 0.66 0.784265
Target:  5'- uGGCCGCcagggUGGaGCGgGCAGGCaCcACCg -3'
miRNA:   3'- -CCGGCGa----GCCgUGCaCGUCCG-GcUGG- -5'
16116 3' -61.7 NC_004065.1 + 138528 0.66 0.784265
Target:  5'- gGGCUGUUggcgcucgaacgCGGCACGaGCGgcGGCgGACUg -3'
miRNA:   3'- -CCGGCGA------------GCCGUGCaCGU--CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 107766 0.66 0.784265
Target:  5'- aGGUCGgugUCGGCGCGggaGCAGcGgCGACa -3'
miRNA:   3'- -CCGGCg--AGCCGUGCa--CGUC-CgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 105429 0.66 0.784265
Target:  5'- uGGCCGC---GCugGUGCGGGacguggCGACg -3'
miRNA:   3'- -CCGGCGagcCGugCACGUCCg-----GCUGg -5'
16116 3' -61.7 NC_004065.1 + 100031 0.66 0.784265
Target:  5'- cGCUGcCUCGGgGCGguauccuccGCAGaGCCuGACCc -3'
miRNA:   3'- cCGGC-GAGCCgUGCa--------CGUC-CGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 34449 0.66 0.783409
Target:  5'- cGGCCGggggacgcgaaucCUgCGGCGCGaugGCGGaGuCUGACCu -3'
miRNA:   3'- -CCGGC-------------GA-GCCGUGCa--CGUC-C-GGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 132350 0.66 0.783409
Target:  5'- aGGUCgGCUUGuggaggcgguaGCACGgGCAGGCCGucgcgucGCCc -3'
miRNA:   3'- -CCGG-CGAGC-----------CGUGCaCGUCCGGC-------UGG- -5'
16116 3' -61.7 NC_004065.1 + 107511 0.66 0.779111
Target:  5'- -aCCGCUCGcacgaggagguGCGCGcggcgaccgcccagcUGCGGGUCGugCg -3'
miRNA:   3'- ccGGCGAGC-----------CGUGC---------------ACGUCCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 22016 0.66 0.775651
Target:  5'- cGCCGC-CGGCacuaacccggccACGgccccggGCAGGCCG-Cg -3'
miRNA:   3'- cCGGCGaGCCG------------UGCa------CGUCCGGCuGg -5'
16116 3' -61.7 NC_004065.1 + 127990 0.66 0.775651
Target:  5'- cGGCCGCcgCGGguCACcgaGguGGCCcGCCg -3'
miRNA:   3'- -CCGGCGa-GCC--GUGca-CguCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 123025 0.66 0.775651
Target:  5'- cGGCCacguaCUCGucagggauGCACGcgGCGagcauGGCCGACCu -3'
miRNA:   3'- -CCGGc----GAGC--------CGUGCa-CGU-----CCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.