miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 65550 0.66 0.766927
Target:  5'- --aCGCUgGGCGCGUcgccgGCGGGUCGcgaguACCu -3'
miRNA:   3'- ccgGCGAgCCGUGCA-----CGUCCGGC-----UGG- -5'
16116 3' -61.7 NC_004065.1 + 127990 0.66 0.775651
Target:  5'- cGGCCGCcgCGGguCACcgaGguGGCCcGCCg -3'
miRNA:   3'- -CCGGCGa-GCC--GUGca-CguCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 168563 0.66 0.775651
Target:  5'- cGGCgGCggCGGCGacaGCGGGCgucuCGGCCc -3'
miRNA:   3'- -CCGgCGa-GCCGUgcaCGUCCG----GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 130159 0.66 0.767804
Target:  5'- aGGCCGUcgcuauccgcgacccCGGCGCcaucugGUGCgacgGGGCCGugCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUG------CACG----UCCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 106983 0.66 0.761642
Target:  5'- cGGCCauGCUCGcCGCGUGCaucccugacgaguacGuGGCCG-CCa -3'
miRNA:   3'- -CCGG--CGAGCcGUGCACG---------------U-CCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 229350 0.66 0.766927
Target:  5'- cGGUCGCUCGaccaGCGaGCGGGUgcucgcuacgcgCGGCCg -3'
miRNA:   3'- -CCGGCGAGCcg--UGCaCGUCCG------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 140545 0.66 0.775651
Target:  5'- aGGCgGCgUCGGCuuccucuaGCG-GCGGGCUGGa- -3'
miRNA:   3'- -CCGgCG-AGCCG--------UGCaCGUCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 78657 0.66 0.758098
Target:  5'- cGGCCGC-CaGCGCa-GC-GGCCGGCg -3'
miRNA:   3'- -CCGGCGaGcCGUGcaCGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 86369 0.66 0.758098
Target:  5'- aGGCU-CUCGGcCACGUcgggGUAGGUcuCGGCCu -3'
miRNA:   3'- -CCGGcGAGCC-GUGCA----CGUCCG--GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 123869 0.66 0.766927
Target:  5'- uGUCGCUCcGCACGcgccGCAGgugcGCCGugCa -3'
miRNA:   3'- cCGGCGAGcCGUGCa---CGUC----CGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 31098 0.66 0.784265
Target:  5'- uGGCCGCcagggUGGaGCGgGCAGGCaCcACCg -3'
miRNA:   3'- -CCGGCGa----GCCgUGCaCGUCCG-GcUGG- -5'
16116 3' -61.7 NC_004065.1 + 209575 0.66 0.792761
Target:  5'- cGGCUGCU-GGCggGCGUGC-GGUCagGAUCa -3'
miRNA:   3'- -CCGGCGAgCCG--UGCACGuCCGG--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 123611 0.66 0.758098
Target:  5'- gGGuuGUUCGGguaGCGgaagaacucCAGGUCGGCCg -3'
miRNA:   3'- -CCggCGAGCCg--UGCac-------GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 138528 0.66 0.784265
Target:  5'- gGGCUGUUggcgcucgaacgCGGCACGaGCGgcGGCgGACUg -3'
miRNA:   3'- -CCGGCGA------------GCCGUGCaCGU--CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 22016 0.66 0.775651
Target:  5'- cGCCGC-CGGCacuaacccggccACGgccccggGCAGGCCG-Cg -3'
miRNA:   3'- cCGGCGaGCCG------------UGCa------CGUCCGGCuGg -5'
16116 3' -61.7 NC_004065.1 + 150361 0.66 0.766048
Target:  5'- gGGCaCGUUCGGCACcucccggGUcauCAGcGCCGACa -3'
miRNA:   3'- -CCG-GCGAGCCGUG-------CAc--GUC-CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 25592 0.66 0.792761
Target:  5'- aGGCgGCUgaGCA---GCAGGCCGAUCu -3'
miRNA:   3'- -CCGgCGAgcCGUgcaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 132350 0.66 0.783409
Target:  5'- aGGUCgGCUUGuggaggcgguaGCACGgGCAGGCCGucgcgucGCCc -3'
miRNA:   3'- -CCGG-CGAGC-----------CGUGCaCGUCCGGC-------UGG- -5'
16116 3' -61.7 NC_004065.1 + 195049 0.66 0.758098
Target:  5'- aGGgCGCaCGGCGucucucugaaGUGCAGGUCGGgCg -3'
miRNA:   3'- -CCgGCGaGCCGUg---------CACGUCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 157109 0.66 0.775651
Target:  5'- cGGCCGCggaGGCGCGacucGCgaacgAGGUCGAg- -3'
miRNA:   3'- -CCGGCGag-CCGUGCa---CG-----UCCGGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.