miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 106151 0.66 0.758098
Target:  5'- cGG-CGCaccugCGGCGCGUGCGGaG-CGACa -3'
miRNA:   3'- -CCgGCGa----GCCGUGCACGUC-CgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 206823 0.66 0.758098
Target:  5'- uGCUGCgaauUCGG-GCGggaucgGCgGGGCCGACCu -3'
miRNA:   3'- cCGGCG----AGCCgUGCa-----CG-UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 138528 0.66 0.784265
Target:  5'- gGGCUGUUggcgcucgaacgCGGCACGaGCGgcGGCgGACUg -3'
miRNA:   3'- -CCGGCGA------------GCCGUGCaCGU--CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 127226 0.66 0.792761
Target:  5'- cGGCCGCgaggaUCgGGCGCGgugGCGGGgaUGAUg -3'
miRNA:   3'- -CCGGCG-----AG-CCGUGCa--CGUCCg-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 31098 0.66 0.784265
Target:  5'- uGGCCGCcagggUGGaGCGgGCAGGCaCcACCg -3'
miRNA:   3'- -CCGGCGa----GCCgUGCaCGUCCG-GcUGG- -5'
16116 3' -61.7 NC_004065.1 + 57039 0.66 0.792761
Target:  5'- uGGCuCGUcgUCGGCACGacggGCAaGGCC--CCg -3'
miRNA:   3'- -CCG-GCG--AGCCGUGCa---CGU-CCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 65550 0.66 0.766927
Target:  5'- --aCGCUgGGCGCGUcgccgGCGGGUCGcgaguACCu -3'
miRNA:   3'- ccgGCGAgCCGUGCA-----CGUCCGGC-----UGG- -5'
16116 3' -61.7 NC_004065.1 + 130159 0.66 0.767804
Target:  5'- aGGCCGUcgcuauccgcgacccCGGCGCcaucugGUGCgacgGGGCCGugCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUG------CACG----UCCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 127990 0.66 0.775651
Target:  5'- cGGCCGCcgCGGguCACcgaGguGGCCcGCCg -3'
miRNA:   3'- -CCGGCGa-GCC--GUGca-CguCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 25592 0.66 0.792761
Target:  5'- aGGCgGCUgaGCA---GCAGGCCGAUCu -3'
miRNA:   3'- -CCGgCGAgcCGUgcaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 7 0.66 0.801131
Target:  5'- cGGCCGUcUGaGUGCGcGCGGGCCc-CCg -3'
miRNA:   3'- -CCGGCGaGC-CGUGCaCGUCCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 27805 0.66 0.766048
Target:  5'- cGGCaccaaGCUCugugucgGGUACcccccgggGUGguGGCUGGCCg -3'
miRNA:   3'- -CCGg----CGAG-------CCGUG--------CACguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 130098 0.66 0.758098
Target:  5'- uGCCGUUCGGCGCccgcccuucuGUGUcuGUCGGCg -3'
miRNA:   3'- cCGGCGAGCCGUG----------CACGucCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 104102 0.66 0.758098
Target:  5'- -uCCGgUCGGCcugcACGUGCcgagcGGCCgGGCCu -3'
miRNA:   3'- ccGGCgAGCCG----UGCACGu----CCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 200770 0.66 0.792761
Target:  5'- cGGUCGCUCucucgucGCGCGgcggugGCGGGCgaCGGCg -3'
miRNA:   3'- -CCGGCGAGc------CGUGCa-----CGUCCG--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 66645 0.66 0.755431
Target:  5'- cGGCU--UCGGCGCG-GUGGGCgcccggcgaguguuCGACCa -3'
miRNA:   3'- -CCGGcgAGCCGUGCaCGUCCG--------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 107673 0.66 0.758098
Target:  5'- aGGUgaCGCU-GGCcuACGUGCGGaaGCUGGCCc -3'
miRNA:   3'- -CCG--GCGAgCCG--UGCACGUC--CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 201682 0.66 0.758098
Target:  5'- aGGCUGCggCGGCACaacgcgGaCAGGCCcuguCCg -3'
miRNA:   3'- -CCGGCGa-GCCGUGca----C-GUCCGGcu--GG- -5'
16116 3' -61.7 NC_004065.1 + 210516 0.66 0.775651
Target:  5'- cGCCGUUCGGCAgCG-GUuccGCCGuCCc -3'
miRNA:   3'- cCGGCGAGCCGU-GCaCGuc-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 107511 0.66 0.779111
Target:  5'- -aCCGCUCGcacgaggagguGCGCGcggcgaccgcccagcUGCGGGUCGugCg -3'
miRNA:   3'- ccGGCGAGC-----------CGUGC---------------ACGUCCGGCugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.