Results 41 - 60 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 130159 | 0.66 | 0.767804 |
Target: 5'- aGGCCGUcgcuauccgcgacccCGGCGCcaucugGUGCgacgGGGCCGugCu -3' miRNA: 3'- -CCGGCGa--------------GCCGUG------CACG----UCCGGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 127646 | 0.66 | 0.766927 |
Target: 5'- uGCCGCUgCGGCGCcgaggGC-GGCgGgACCa -3' miRNA: 3'- cCGGCGA-GCCGUGca---CGuCCGgC-UGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 229350 | 0.66 | 0.766927 |
Target: 5'- cGGUCGCUCGaccaGCGaGCGGGUgcucgcuacgcgCGGCCg -3' miRNA: 3'- -CCGGCGAGCcg--UGCaCGUCCG------------GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 65550 | 0.66 | 0.766927 |
Target: 5'- --aCGCUgGGCGCGUcgccgGCGGGUCGcgaguACCu -3' miRNA: 3'- ccgGCGAgCCGUGCA-----CGUCCGGC-----UGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 123869 | 0.66 | 0.766927 |
Target: 5'- uGUCGCUCcGCACGcgccGCAGgugcGCCGugCa -3' miRNA: 3'- cCGGCGAGcCGUGCa---CGUC----CGGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 150361 | 0.66 | 0.766048 |
Target: 5'- gGGCaCGUUCGGCACcucccggGUcauCAGcGCCGACa -3' miRNA: 3'- -CCG-GCGAGCCGUG-------CAc--GUC-CGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 52132 | 0.67 | 0.721897 |
Target: 5'- cGUCGUcCGuaACGUcuccaGCGGGCCGAUCa -3' miRNA: 3'- cCGGCGaGCcgUGCA-----CGUCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 110390 | 0.67 | 0.712662 |
Target: 5'- aGGCCGUUCGaaCACGc-CAcGGCCGACg -3' miRNA: 3'- -CCGGCGAGCc-GUGCacGU-CCGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 206794 | 0.67 | 0.712662 |
Target: 5'- uGCCGCUCGuGuCGCGUcCAGaGuCCGugCg -3' miRNA: 3'- cCGGCGAGC-C-GUGCAcGUC-C-GGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 26906 | 0.67 | 0.721897 |
Target: 5'- aGGCCGCUCGaccGCACGccgGaccccgaagaAGGCUcaagGACCg -3' miRNA: 3'- -CCGGCGAGC---CGUGCa--Cg---------UCCGG----CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 93982 | 0.67 | 0.721897 |
Target: 5'- -uCCGUUCGGCACc--CuGGCCGGCUu -3' miRNA: 3'- ccGGCGAGCCGUGcacGuCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 121694 | 0.67 | 0.721897 |
Target: 5'- uGCCGCUCGGCAa--GUAaacGuuGACCg -3' miRNA: 3'- cCGGCGAGCCGUgcaCGUc--CggCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 109435 | 0.67 | 0.711735 |
Target: 5'- aGCCGCgcuggCGGCGCGUGUAucGCCucacgcaGAUCg -3' miRNA: 3'- cCGGCGa----GCCGUGCACGUc-CGG-------CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 164550 | 0.67 | 0.703367 |
Target: 5'- cGCUGUgUCGaGC-CGgcgGCGGcGCCGACCg -3' miRNA: 3'- cCGGCG-AGC-CGuGCa--CGUC-CGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 107804 | 0.67 | 0.703367 |
Target: 5'- uGGCCGUg-GGCGa--GCGGGCC-ACCa -3' miRNA: 3'- -CCGGCGagCCGUgcaCGUCCGGcUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 201208 | 0.67 | 0.703367 |
Target: 5'- gGGCgGCgCGGCgACGUGCGuGCagagGACCc -3' miRNA: 3'- -CCGgCGaGCCG-UGCACGUcCGg---CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 83455 | 0.67 | 0.743776 |
Target: 5'- cGGCaCGagCGGCAccuuacccgcgacgcCGacgaugucggGCAGGCCGACCa -3' miRNA: 3'- -CCG-GCgaGCCGU---------------GCa---------CGUCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 103383 | 0.67 | 0.740161 |
Target: 5'- cGCCGUcaacaCGGUguuGCGUGCGgugaaaaacacGGCCGACg -3' miRNA: 3'- cCGGCGa----GCCG---UGCACGU-----------CCGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 151146 | 0.67 | 0.749174 |
Target: 5'- cGCCGCgaugaucgUCGGCgaccGCGagcugGCGcGCCGGCCg -3' miRNA: 3'- cCGGCG--------AGCCG----UGCa----CGUcCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 43143 | 0.67 | 0.749174 |
Target: 5'- cGGCCGCggaagacaCGcGCACGgacgGCGGGaacggcagacaCCGACa -3' miRNA: 3'- -CCGGCGa-------GC-CGUGCa---CGUCC-----------GGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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