miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 166925 0.67 0.731066
Target:  5'- cGGCUGuCUCGGCACGcuacaGCgacuGGGCUGGu- -3'
miRNA:   3'- -CCGGC-GAGCCGUGCa----CG----UCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 168695 0.67 0.727407
Target:  5'- gGGUCGCcgCGGCucucgccgucgaGUGCgAGGUCGACg -3'
miRNA:   3'- -CCGGCGa-GCCGug----------CACG-UCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 129719 0.67 0.720055
Target:  5'- uGGCUGCgcgaagacaucgCGGCuCGUGCgAGGUgGGCg -3'
miRNA:   3'- -CCGGCGa-----------GCCGuGCACG-UCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 119836 0.67 0.712662
Target:  5'- cGGgCGg-CGGCGCGUcGC-GGCCG-CCg -3'
miRNA:   3'- -CCgGCgaGCCGUGCA-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 71300 0.67 0.712662
Target:  5'- uGGCCGCgcuggucGCACGU-CGGGCgcgcaGACCa -3'
miRNA:   3'- -CCGGCGagc----CGUGCAcGUCCGg----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 108660 0.67 0.721897
Target:  5'- uGCCGCU-GGCGCccGUGCGGaUgGACCu -3'
miRNA:   3'- cCGGCGAgCCGUG--CACGUCcGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 22387 0.67 0.703367
Target:  5'- cGGCCGCgugCGGCAUGgaGCugucccuGGUC-ACCg -3'
miRNA:   3'- -CCGGCGa--GCCGUGCa-CGu------CCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 39646 0.67 0.712662
Target:  5'- aGCUGCgagccugaaGGCuACG-GguGGCUGACCa -3'
miRNA:   3'- cCGGCGag-------CCG-UGCaCguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 103383 0.67 0.740161
Target:  5'- cGCCGUcaacaCGGUguuGCGUGCGgugaaaaacacGGCCGACg -3'
miRNA:   3'- cCGGCGa----GCCG---UGCACGU-----------CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 23193 0.67 0.731066
Target:  5'- cGCCuuUCGGCugGUGUAu-CUGACCg -3'
miRNA:   3'- cCGGcgAGCCGugCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 206794 0.67 0.712662
Target:  5'- uGCCGCUCGuGuCGCGUcCAGaGuCCGugCg -3'
miRNA:   3'- cCGGCGAGC-C-GUGCAcGUC-C-GGCugG- -5'
16116 3' -61.7 NC_004065.1 + 110390 0.67 0.712662
Target:  5'- aGGCCGUUCGaaCACGc-CAcGGCCGACg -3'
miRNA:   3'- -CCGGCGAGCc-GUGCacGU-CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 109435 0.67 0.711735
Target:  5'- aGCCGCgcuggCGGCGCGUGUAucGCCucacgcaGAUCg -3'
miRNA:   3'- cCGGCGa----GCCGUGCACGUc-CGG-------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 164550 0.67 0.703367
Target:  5'- cGCUGUgUCGaGC-CGgcgGCGGcGCCGACCg -3'
miRNA:   3'- cCGGCG-AGC-CGuGCa--CGUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 107804 0.67 0.703367
Target:  5'- uGGCCGUg-GGCGa--GCGGGCC-ACCa -3'
miRNA:   3'- -CCGGCGagCCGUgcaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 201208 0.67 0.703367
Target:  5'- gGGCgGCgCGGCgACGUGCGuGCagagGACCc -3'
miRNA:   3'- -CCGgCGaGCCG-UGCACGUcCGg---CUGG- -5'
16116 3' -61.7 NC_004065.1 + 78 0.67 0.749174
Target:  5'- uGCCGCggcgcccucggCGGCAaaaaaGUGCAGcCCGcCCa -3'
miRNA:   3'- cCGGCGa----------GCCGUg----CACGUCcGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 116521 0.67 0.731066
Target:  5'- cGGCC--UCGGCgucaaagagACGUaCGGuGCCGACCg -3'
miRNA:   3'- -CCGGcgAGCCG---------UGCAcGUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 28540 0.67 0.749174
Target:  5'- -aCCGCg-GGC-CGU-CGGGUCGACCg -3'
miRNA:   3'- ccGGCGagCCGuGCAcGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 101001 0.67 0.716363
Target:  5'- uGGUCGCUuugagguugaugacgCGGUugGUGUugaAGGCauugaCGGCCa -3'
miRNA:   3'- -CCGGCGA---------------GCCGugCACG---UCCG-----GCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.