miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 201208 0.67 0.703367
Target:  5'- gGGCgGCgCGGCgACGUGCGuGCagagGACCc -3'
miRNA:   3'- -CCGgCGaGCCG-UGCACGUcCGg---CUGG- -5'
16116 3' -61.7 NC_004065.1 + 168695 0.67 0.727407
Target:  5'- gGGUCGCcgCGGCucucgccgucgaGUGCgAGGUCGACg -3'
miRNA:   3'- -CCGGCGa-GCCGug----------CACG-UCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 108660 0.67 0.721897
Target:  5'- uGCCGCU-GGCGCccGUGCGGaUgGACCu -3'
miRNA:   3'- cCGGCGAgCCGUG--CACGUCcGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 164653 0.68 0.694021
Target:  5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3'
miRNA:   3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 6744 0.68 0.68463
Target:  5'- aGCCGCggCGGCACu--CGGGUCGGuCCu -3'
miRNA:   3'- cCGGCGa-GCCGUGcacGUCCGGCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 153464 0.68 0.656259
Target:  5'- cGCCGCUuuucugCGGCAUGUGUacgggGGGUgCGACa -3'
miRNA:   3'- cCGGCGA------GCCGUGCACG-----UCCG-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 229538 0.68 0.665742
Target:  5'- -uCCGCggacgCGGCGCGcgGCccggAGGCUGACUc -3'
miRNA:   3'- ccGGCGa----GCCGUGCa-CG----UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 148836 0.68 0.656259
Target:  5'- -cUCGCUCGGcCACGagGC-GGCCG-CCg -3'
miRNA:   3'- ccGGCGAGCC-GUGCa-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 30508 0.68 0.64676
Target:  5'- cGGCUGCgc-GCACGUgGC-GGCCG-CCg -3'
miRNA:   3'- -CCGGCGagcCGUGCA-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 188657 0.68 0.68463
Target:  5'- -uCCGCUCgagGGCGCGcgGCGGGagaCGACg -3'
miRNA:   3'- ccGGCGAG---CCGUGCa-CGUCCg--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 146862 0.68 0.656259
Target:  5'- uGGuCUGCaUCGGCGCGUgaacGCGGG-CGGCa -3'
miRNA:   3'- -CC-GGCG-AGCCGUGCA----CGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 168969 0.68 0.694021
Target:  5'- cGGCCuCUCGGUgucCGUcaGCGcGGCgGACCu -3'
miRNA:   3'- -CCGGcGAGCCGu--GCA--CGU-CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 229654 0.68 0.694021
Target:  5'- cGGCCGg-CGGCA-GUgGCAGGUgGGCg -3'
miRNA:   3'- -CCGGCgaGCCGUgCA-CGUCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 136060 0.68 0.68463
Target:  5'- cGGCgGCUUcuGCGCGaccuuccagcUGCAGGuaGACCa -3'
miRNA:   3'- -CCGgCGAGc-CGUGC----------ACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 577 0.68 0.64676
Target:  5'- gGGCUGg-CGGCAgcgccacccCGUGguGGCaGACCa -3'
miRNA:   3'- -CCGGCgaGCCGU---------GCACguCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 98647 0.68 0.68463
Target:  5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 139899 0.68 0.68557
Target:  5'- uGGCCGCggggccuccggccggCGGCGCcaGCGGGuuGAa- -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGcaCGUCCggCUgg -5'
16116 3' -61.7 NC_004065.1 + 198994 0.68 0.694021
Target:  5'- uGG-CGCUCGGCAgGgccGC-GGCCGAg- -3'
miRNA:   3'- -CCgGCGAGCCGUgCa--CGuCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 31707 0.68 0.694021
Target:  5'- uGGCCGUuccgCGGCAUGUGCGaccCCGAg- -3'
miRNA:   3'- -CCGGCGa---GCCGUGCACGUcc-GGCUgg -5'
16116 3' -61.7 NC_004065.1 + 166543 0.68 0.694021
Target:  5'- uGGCUGCgcgaCGGCGCcugGC-GGCUGcACCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGca-CGuCCGGC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.