miRNA display CGI


Results 101 - 120 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 577 0.68 0.64676
Target:  5'- gGGCUGg-CGGCAgcgccacccCGUGguGGCaGACCa -3'
miRNA:   3'- -CCGGCgaGCCGU---------GCACguCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 51125 0.68 0.675201
Target:  5'- cGCCGauugcugCGGCACGUaGC-GGCgCGACUu -3'
miRNA:   3'- cCGGCga-----GCCGUGCA-CGuCCG-GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 45542 0.68 0.675201
Target:  5'- cGCCGCggCGGCgGCG-GCAG-CCGcCCa -3'
miRNA:   3'- cCGGCGa-GCCG-UGCaCGUCcGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 115043 0.68 0.676145
Target:  5'- cGGCCGCcagggccgagggcaaCGGCGCGcGCgAGGaCgCGGCCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGCaCG-UCC-G-GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 70531 0.68 0.68463
Target:  5'- aGCUGCa-GGCGCGccUGCAGGCgCGAg- -3'
miRNA:   3'- cCGGCGagCCGUGC--ACGUCCG-GCUgg -5'
16116 3' -61.7 NC_004065.1 + 98647 0.68 0.68463
Target:  5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 136060 0.68 0.68463
Target:  5'- cGGCgGCUUcuGCGCGaccuuccagcUGCAGGuaGACCa -3'
miRNA:   3'- -CCGgCGAGc-CGUGC----------ACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 164653 0.68 0.694021
Target:  5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3'
miRNA:   3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 229654 0.68 0.694021
Target:  5'- cGGCCGg-CGGCA-GUgGCAGGUgGGCg -3'
miRNA:   3'- -CCGGCgaGCCGUgCA-CGUCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 34374 0.68 0.675201
Target:  5'- cGCCGCUCGGCugcCG-GgAGGCgaGGCg -3'
miRNA:   3'- cCGGCGAGCCGu--GCaCgUCCGg-CUGg -5'
16116 3' -61.7 NC_004065.1 + 68838 0.68 0.675201
Target:  5'- aGUCGCagGuGCACGUGCAacucgccaGCUGACCg -3'
miRNA:   3'- cCGGCGagC-CGUGCACGUc-------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 168969 0.68 0.694021
Target:  5'- cGGCCuCUCGGUgucCGUcaGCGcGGCgGACCu -3'
miRNA:   3'- -CCGGcGAGCCGu--GCA--CGU-CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 111976 0.68 0.656259
Target:  5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3'
miRNA:   3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 33734 0.68 0.656259
Target:  5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3'
miRNA:   3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 125602 0.68 0.656259
Target:  5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3'
miRNA:   3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 113312 0.68 0.656259
Target:  5'- cGCCGCUCGcGCGcCGgacGCGGGaUCGAUg -3'
miRNA:   3'- cCGGCGAGC-CGU-GCa--CGUCC-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 92463 0.68 0.665742
Target:  5'- -cCCGCcuuccgCGGCgAUGUGCcgggccagAGGCUGACCg -3'
miRNA:   3'- ccGGCGa-----GCCG-UGCACG--------UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 58314 0.68 0.675201
Target:  5'- uGGuCCGUcaugaCGcGCAgCGUGCAGGCCagcuuaguGACCa -3'
miRNA:   3'- -CC-GGCGa----GC-CGU-GCACGUCCGG--------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 98874 0.69 0.599243
Target:  5'- cGCCGCUCuacGgGCG-GCAGGuaGGCCg -3'
miRNA:   3'- cCGGCGAGc--CgUGCaCGUCCggCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.