Results 21 - 40 of 188 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 55775 | 0.72 | 0.453694 |
Target: 5'- uGGCgGuCUCGGCGCcgaGCAGGCgaucgcggcugaCGACCa -3' miRNA: 3'- -CCGgC-GAGCCGUGca-CGUCCG------------GCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 202734 | 0.72 | 0.445197 |
Target: 5'- cGGCCGuUUCGGCuCGUGUcccgAGcGCCGuCCg -3' miRNA: 3'- -CCGGC-GAGCCGuGCACG----UC-CGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 149928 | 0.72 | 0.445197 |
Target: 5'- cGCgGCUCGGCAgGagGCGGGCUuGAUCc -3' miRNA: 3'- cCGgCGAGCCGUgCa-CGUCCGG-CUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 194820 | 0.72 | 0.444352 |
Target: 5'- cGCCGUggCGGUggccgccACGUucucCAGGCCGACCa -3' miRNA: 3'- cCGGCGa-GCCG-------UGCAc---GUCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 121471 | 0.72 | 0.436791 |
Target: 5'- aGGUCGgUCGGCGCGUccGCGGGCgUGAa- -3' miRNA: 3'- -CCGGCgAGCCGUGCA--CGUCCG-GCUgg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 87242 | 0.71 | 0.488526 |
Target: 5'- uGGCCGCcccCGGCGCcaccaccaGCAGGCCGuCg -3' miRNA: 3'- -CCGGCGa--GCCGUGca------CGUCCGGCuGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 21964 | 0.71 | 0.479697 |
Target: 5'- gGGCCGUcgUCGGCAgGacgGUgaGGGCCG-CCa -3' miRNA: 3'- -CCGGCG--AGCCGUgCa--CG--UCCGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 149050 | 0.71 | 0.479697 |
Target: 5'- cGGgCGacgaCGGCgGCG-GCAGGCCGAUCg -3' miRNA: 3'- -CCgGCga--GCCG-UGCaCGUCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 41386 | 0.71 | 0.479697 |
Target: 5'- uGGUCGUggugUGGUACGUGCucGCCG-CCg -3' miRNA: 3'- -CCGGCGa---GCCGUGCACGucCGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 42057 | 0.71 | 0.488526 |
Target: 5'- cGGCgUGCUgGcGCugGUGU-GGCUGACCu -3' miRNA: 3'- -CCG-GCGAgC-CGugCACGuCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 138301 | 0.71 | 0.496537 |
Target: 5'- aGGCCGUggacgCGGCccugaucGCGUGCgAGGCCu-CCu -3' miRNA: 3'- -CCGGCGa----GCCG-------UGCACG-UCCGGcuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 59333 | 0.71 | 0.51909 |
Target: 5'- cGCCGCgggCGGCguGCGauuuccagcuccgagUGCGuGGUCGACCa -3' miRNA: 3'- cCGGCGa--GCCG--UGC---------------ACGU-CCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 80803 | 0.71 | 0.516361 |
Target: 5'- cGGCgGCggCGGCAgCGggagcagcgacagcaGCAGGCCGAgCg -3' miRNA: 3'- -CCGgCGa-GCCGU-GCa--------------CGUCCGGCUgG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 110428 | 0.71 | 0.514546 |
Target: 5'- cGCCGC-CGGCguccugcACGUcCAGGCCaGCCg -3' miRNA: 3'- cCGGCGaGCCG-------UGCAcGUCCGGcUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 68790 | 0.71 | 0.479697 |
Target: 5'- aGGCCGUgUCGGagaACGUGCGGGCgCuGCg -3' miRNA: 3'- -CCGGCG-AGCCg--UGCACGUCCG-GcUGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 136674 | 0.71 | 0.470947 |
Target: 5'- gGGCgGgUCuGGC-CGgcgGCGGGCCGGCUc -3' miRNA: 3'- -CCGgCgAG-CCGuGCa--CGUCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 194457 | 0.7 | 0.58034 |
Target: 5'- aGCgGUUgGGCACG-GCGGcGCCG-CCg -3' miRNA: 3'- cCGgCGAgCCGUGCaCGUC-CGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 116788 | 0.7 | 0.570934 |
Target: 5'- cGGuuGCgCGGCcacguACGUGUuGGCCGguACCg -3' miRNA: 3'- -CCggCGaGCCG-----UGCACGuCCGGC--UGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 88028 | 0.7 | 0.58034 |
Target: 5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3' miRNA: 3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 36120 | 0.7 | 0.58034 |
Target: 5'- gGGCCGCUgcCGGCGgcgguUGUGguGGuuGugUu -3' miRNA: 3'- -CCGGCGA--GCCGU-----GCACguCCggCugG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home