miRNA display CGI


Results 41 - 60 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 130476 0.7 0.58034
Target:  5'- cGGCCGUccgccgCGGCgagACG-GgAGcGCCGACCa -3'
miRNA:   3'- -CCGGCGa-----GCCG---UGCaCgUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 183838 0.7 0.552239
Target:  5'- uGUCGUUCGGCccccacgccgucGCGUGUuuGGCCGugGCCg -3'
miRNA:   3'- cCGGCGAGCCG------------UGCACGu-CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 157340 0.7 0.542961
Target:  5'- gGGUCGCUCGGCAgGUucucCAGGUgccgcaCGAUCa -3'
miRNA:   3'- -CCGGCGAGCCGUgCAc---GUCCG------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 36120 0.7 0.58034
Target:  5'- gGGCCGCUgcCGGCGgcgguUGUGguGGuuGugUu -3'
miRNA:   3'- -CCGGCGA--GCCGU-----GCACguCCggCugG- -5'
16116 3' -61.7 NC_004065.1 + 194457 0.7 0.58034
Target:  5'- aGCgGUUgGGCACG-GCGGcGCCG-CCg -3'
miRNA:   3'- cCGgCGAgCCGUGCaCGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 66623 0.7 0.58034
Target:  5'- aGCCGCgggcugCGGCGC-UGCGuGGCgGACg -3'
miRNA:   3'- cCGGCGa-----GCCGUGcACGU-CCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 128407 0.7 0.570934
Target:  5'- gGGCCGagCGGCAgCGgcgGCGGcGCCG-CCa -3'
miRNA:   3'- -CCGGCgaGCCGU-GCa--CGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 139430 0.7 0.561566
Target:  5'- cGCUGCUCaaGGaCGCuaUGCGGGCgGACCu -3'
miRNA:   3'- cCGGCGAG--CC-GUGc-ACGUCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 119009 0.7 0.542961
Target:  5'- gGGCCGCguggUUGGaCGCGUGguaCAuGGCCGugCu -3'
miRNA:   3'- -CCGGCG----AGCC-GUGCAC---GU-CCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 196821 0.7 0.524563
Target:  5'- gGGUCGUggucaccugCGGCAgGUGCGGG-CGACg -3'
miRNA:   3'- -CCGGCGa--------GCCGUgCACGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 108811 0.7 0.533734
Target:  5'- cGGCCGUUCaGcCGCGgcaaCAGGCUGACg -3'
miRNA:   3'- -CCGGCGAGcC-GUGCac--GUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 88028 0.7 0.58034
Target:  5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3'
miRNA:   3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 163431 0.69 0.627739
Target:  5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3'
miRNA:   3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 145783 0.69 0.6363
Target:  5'- cGGgCGCUCGcacagauccucauGCACGU-CGGGCCgGACUu -3'
miRNA:   3'- -CCgGCGAGC-------------CGUGCAcGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 211146 0.69 0.589778
Target:  5'- uGGCCGUUCGGgGgGgaGCGGGCguGCCg -3'
miRNA:   3'- -CCGGCGAGCCgUgCa-CGUCCGgcUGG- -5'
16116 3' -61.7 NC_004065.1 + 199918 0.69 0.589778
Target:  5'- aGGCCGC-CGGgGC-UGCAGcucucgcuaccGCUGGCCu -3'
miRNA:   3'- -CCGGCGaGCCgUGcACGUC-----------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 98874 0.69 0.599243
Target:  5'- cGCCGCUCuacGgGCG-GCAGGuaGGCCg -3'
miRNA:   3'- cCGGCGAGc--CgUGCaCGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 96645 0.69 0.637251
Target:  5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3'
miRNA:   3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.