miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 96645 0.69 0.637251
Target:  5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3'
miRNA:   3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 192695 0.69 0.618229
Target:  5'- gGGCUGCUcCGGaugACGgaaGCuGGuGCCGACCg -3'
miRNA:   3'- -CCGGCGA-GCCg--UGCa--CG-UC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151362 0.69 0.627739
Target:  5'- cGCCGCggcgcCGGC-CGcUGCGcuggcGGCCGAUCu -3'
miRNA:   3'- cCGGCGa----GCCGuGC-ACGU-----CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162575 0.69 0.6363
Target:  5'- cGCCGcCUCGGCcgacagguccgucGUGUGCGGGUCGAa- -3'
miRNA:   3'- cCGGC-GAGCCG-------------UGCACGUCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 163431 0.69 0.627739
Target:  5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3'
miRNA:   3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151410 0.69 0.618229
Target:  5'- aGGCgGgUCGGU-CGgGguGGUCGACCu -3'
miRNA:   3'- -CCGgCgAGCCGuGCaCguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 211146 0.69 0.589778
Target:  5'- uGGCCGUUCGGgGgGgaGCGGGCguGCCg -3'
miRNA:   3'- -CCGGCGAGCCgUgCa-CGUCCGgcUGG- -5'
16116 3' -61.7 NC_004065.1 + 199918 0.69 0.589778
Target:  5'- aGGCCGC-CGGgGC-UGCAGcucucgcuaccGCUGGCCu -3'
miRNA:   3'- -CCGGCGaGCCgUGcACGUC-----------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 33734 0.68 0.656259
Target:  5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3'
miRNA:   3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 229654 0.68 0.694021
Target:  5'- cGGCCGg-CGGCA-GUgGCAGGUgGGCg -3'
miRNA:   3'- -CCGGCgaGCCGUgCA-CGUCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 136060 0.68 0.68463
Target:  5'- cGGCgGCUUcuGCGCGaccuuccagcUGCAGGuaGACCa -3'
miRNA:   3'- -CCGgCGAGc-CGUGC----------ACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 34374 0.68 0.675201
Target:  5'- cGCCGCUCGGCugcCG-GgAGGCgaGGCg -3'
miRNA:   3'- cCGGCGAGCCGu--GCaCgUCCGg-CUGg -5'
16116 3' -61.7 NC_004065.1 + 51125 0.68 0.675201
Target:  5'- cGCCGauugcugCGGCACGUaGC-GGCgCGACUu -3'
miRNA:   3'- cCGGCga-----GCCGUGCA-CGuCCG-GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 45542 0.68 0.675201
Target:  5'- cGCCGCggCGGCgGCG-GCAG-CCGcCCa -3'
miRNA:   3'- cCGGCGa-GCCG-UGCaCGUCcGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 164653 0.68 0.694021
Target:  5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3'
miRNA:   3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 70531 0.68 0.68463
Target:  5'- aGCUGCa-GGCGCGccUGCAGGCgCGAg- -3'
miRNA:   3'- cCGGCGagCCGUGC--ACGUCCG-GCUgg -5'
16116 3' -61.7 NC_004065.1 + 98647 0.68 0.68463
Target:  5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 115043 0.68 0.676145
Target:  5'- cGGCCGCcagggccgagggcaaCGGCGCGcGCgAGGaCgCGGCCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGCaCG-UCC-G-GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.