miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 34374 0.68 0.675201
Target:  5'- cGCCGCUCGGCugcCG-GgAGGCgaGGCg -3'
miRNA:   3'- cCGGCGAGCCGu--GCaCgUCCGg-CUGg -5'
16116 3' -61.7 NC_004065.1 + 68838 0.68 0.675201
Target:  5'- aGUCGCagGuGCACGUGCAacucgccaGCUGACCg -3'
miRNA:   3'- cCGGCGagC-CGUGCACGUc-------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 58314 0.68 0.675201
Target:  5'- uGGuCCGUcaugaCGcGCAgCGUGCAGGCCagcuuaguGACCa -3'
miRNA:   3'- -CC-GGCGa----GC-CGU-GCACGUCCGG--------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 113312 0.68 0.656259
Target:  5'- cGCCGCUCGcGCGcCGgacGCGGGaUCGAUg -3'
miRNA:   3'- cCGGCGAGC-CGU-GCa--CGUCC-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 111976 0.68 0.656259
Target:  5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3'
miRNA:   3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 125602 0.68 0.656259
Target:  5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3'
miRNA:   3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 164653 0.68 0.694021
Target:  5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3'
miRNA:   3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 229654 0.68 0.694021
Target:  5'- cGGCCGg-CGGCA-GUgGCAGGUgGGCg -3'
miRNA:   3'- -CCGGCgaGCCGUgCA-CGUCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 577 0.68 0.64676
Target:  5'- gGGCUGg-CGGCAgcgccacccCGUGguGGCaGACCa -3'
miRNA:   3'- -CCGGCgaGCCGU---------GCACguCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 188657 0.68 0.68463
Target:  5'- -uCCGCUCgagGGCGCGcgGCGGGagaCGACg -3'
miRNA:   3'- ccGGCGAG---CCGUGCa-CGUCCg--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 169361 0.68 0.68463
Target:  5'- gGGCCgucugucaGCUCGaCGCGUGCGuGGCgcggggcaacaCGGCCg -3'
miRNA:   3'- -CCGG--------CGAGCcGUGCACGU-CCG-----------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 15897 0.68 0.68463
Target:  5'- -aUCGCguccuuuuauugUCGGCGCGUGCGa-CCGGCCg -3'
miRNA:   3'- ccGGCG------------AGCCGUGCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 78858 0.68 0.68463
Target:  5'- gGGCgGC-CGGCGCGccagcucGCGGucGCCGACg -3'
miRNA:   3'- -CCGgCGaGCCGUGCa------CGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 4402 0.68 0.68463
Target:  5'- uGCUGUUCGGagcgguggcCACG-GCGGGCCuGACg -3'
miRNA:   3'- cCGGCGAGCC---------GUGCaCGUCCGG-CUGg -5'
16116 3' -61.7 NC_004065.1 + 86850 0.68 0.668582
Target:  5'- gGGCCGCUCGGCgGacaggaugaaguccuCGUcgucaucaccgacGCAGGUCGcggcGCCg -3'
miRNA:   3'- -CCGGCGAGCCG-U---------------GCA-------------CGUCCGGC----UGG- -5'
16116 3' -61.7 NC_004065.1 + 120600 0.68 0.665742
Target:  5'- cGCCGCcagcgCGGCugGuUGUAGaGCC-ACCu -3'
miRNA:   3'- cCGGCGa----GCCGugC-ACGUC-CGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 229538 0.68 0.665742
Target:  5'- -uCCGCggacgCGGCGCGcgGCccggAGGCUGACUc -3'
miRNA:   3'- ccGGCGa----GCCGUGCa-CG----UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 153464 0.68 0.656259
Target:  5'- cGCCGCUuuucugCGGCAUGUGUacgggGGGUgCGACa -3'
miRNA:   3'- cCGGCGA------GCCGUGCACG-----UCCG-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 148836 0.68 0.656259
Target:  5'- -cUCGCUCGGcCACGagGC-GGCCG-CCg -3'
miRNA:   3'- ccGGCGAGCC-GUGCa-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 33734 0.68 0.656259
Target:  5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3'
miRNA:   3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.