miRNA display CGI


Results 101 - 120 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 86850 0.68 0.668582
Target:  5'- gGGCCGCUCGGCgGacaggaugaaguccuCGUcgucaucaccgacGCAGGUCGcggcGCCg -3'
miRNA:   3'- -CCGGCGAGCCG-U---------------GCA-------------CGUCCGGC----UGG- -5'
16116 3' -61.7 NC_004065.1 + 4402 0.68 0.68463
Target:  5'- uGCUGUUCGGagcgguggcCACG-GCGGGCCuGACg -3'
miRNA:   3'- cCGGCGAGCC---------GUGCaCGUCCGG-CUGg -5'
16116 3' -61.7 NC_004065.1 + 15897 0.68 0.68463
Target:  5'- -aUCGCguccuuuuauugUCGGCGCGUGCGa-CCGGCCg -3'
miRNA:   3'- ccGGCG------------AGCCGUGCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 78858 0.68 0.68463
Target:  5'- gGGCgGC-CGGCGCGccagcucGCGGucGCCGACg -3'
miRNA:   3'- -CCGgCGaGCCGUGCa------CGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 6744 0.68 0.68463
Target:  5'- aGCCGCggCGGCACu--CGGGUCGGuCCu -3'
miRNA:   3'- cCGGCGa-GCCGUGcacGUCCGGCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 47300 0.67 0.749174
Target:  5'- uGGCC-C-CGGCGucgccCGUG-AGGCCGAUCc -3'
miRNA:   3'- -CCGGcGaGCCGU-----GCACgUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151146 0.67 0.749174
Target:  5'- cGCCGCgaugaucgUCGGCgaccGCGagcugGCGcGCCGGCCg -3'
miRNA:   3'- cCGGCG--------AGCCG----UGCa----CGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 72660 0.67 0.73744
Target:  5'- cGGCCGauacCGGCugauCGUGCGGcaccuggagaaccuGCCGAgCg -3'
miRNA:   3'- -CCGGCga--GCCGu---GCACGUC--------------CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 121694 0.67 0.721897
Target:  5'- uGCCGCUCGGCAa--GUAaacGuuGACCg -3'
miRNA:   3'- cCGGCGAGCCGUgcaCGUc--CggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 52132 0.67 0.721897
Target:  5'- cGUCGUcCGuaACGUcuccaGCGGGCCGAUCa -3'
miRNA:   3'- cCGGCGaGCcgUGCA-----CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162453 0.67 0.730152
Target:  5'- aGGCCccugcGCuUCGGCGaaggccuCGcGC-GGCCGGCCa -3'
miRNA:   3'- -CCGG-----CG-AGCCGU-------GCaCGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 93982 0.67 0.721897
Target:  5'- -uCCGUUCGGCACc--CuGGCCGGCUu -3'
miRNA:   3'- ccGGCGAGCCGUGcacGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 201208 0.67 0.703367
Target:  5'- gGGCgGCgCGGCgACGUGCGuGCagagGACCc -3'
miRNA:   3'- -CCGgCGaGCCG-UGCACGUcCGg---CUGG- -5'
16116 3' -61.7 NC_004065.1 + 107804 0.67 0.703367
Target:  5'- uGGCCGUg-GGCGa--GCGGGCC-ACCa -3'
miRNA:   3'- -CCGGCGagCCGUgcaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 164550 0.67 0.703367
Target:  5'- cGCUGUgUCGaGC-CGgcgGCGGcGCCGACCg -3'
miRNA:   3'- cCGGCG-AGC-CGuGCa--CGUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 206794 0.67 0.712662
Target:  5'- uGCCGCUCGuGuCGCGUcCAGaGuCCGugCg -3'
miRNA:   3'- cCGGCGAGC-C-GUGCAcGUC-C-GGCugG- -5'
16116 3' -61.7 NC_004065.1 + 109435 0.67 0.711735
Target:  5'- aGCCGCgcuggCGGCGCGUGUAucGCCucacgcaGAUCg -3'
miRNA:   3'- cCGGCGa----GCCGUGCACGUc-CGG-------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 110390 0.67 0.712662
Target:  5'- aGGCCGUUCGaaCACGc-CAcGGCCGACg -3'
miRNA:   3'- -CCGGCGAGCc-GUGCacGU-CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 223862 0.67 0.731066
Target:  5'- cGGCCGCcCGGCcCG-GCcaucucGGCCgGAUCg -3'
miRNA:   3'- -CCGGCGaGCCGuGCaCGu-----CCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 26906 0.67 0.721897
Target:  5'- aGGCCGCUCGaccGCACGccgGaccccgaagaAGGCUcaagGACCg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCa--Cg---------UCCGG----CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.