miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 125918 1.13 0.000785
Target:  5'- cGGCCGCUCGGCACGUGCAGGCCGACCg -3'
miRNA:   3'- -CCGGCGAGCCGUGCACGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 80368 0.78 0.197907
Target:  5'- cGGUcaacgCGCUgCGGCGCGUGCAGGgCCuGCCg -3'
miRNA:   3'- -CCG-----GCGA-GCCGUGCACGUCC-GGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 66144 0.76 0.254046
Target:  5'- gGGCCGCggacCGGCGCcaGCuGGCCGAgCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGcaCGuCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 120556 0.76 0.28362
Target:  5'- cGGCgGCggUCGGCGCGaGCGGGCgGgACCu -3'
miRNA:   3'- -CCGgCG--AGCCGUGCaCGUCCGgC-UGG- -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 117400 0.75 0.298757
Target:  5'- cGGCCGCgcgcgcugggcucgCGGCGCGgagugGCA-GCCGAUCg -3'
miRNA:   3'- -CCGGCGa-------------GCCGUGCa----CGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 30152 0.75 0.302637
Target:  5'- cGGCCGCUCGuGC-UGUGCGGcaCCGACg -3'
miRNA:   3'- -CCGGCGAGC-CGuGCACGUCc-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 164760 0.75 0.322622
Target:  5'- cGGCCGUgCGGUacgugGCGUGCAGGgaGAUCa -3'
miRNA:   3'- -CCGGCGaGCCG-----UGCACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 88930 0.74 0.343575
Target:  5'- uGCCGCUgaaGGCGCG-GCGGuaGCUGGCCa -3'
miRNA:   3'- cCGGCGAg--CCGUGCaCGUC--CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 118194 0.74 0.350773
Target:  5'- cGCCGUUCGGUugGcGC-GGCUGACg -3'
miRNA:   3'- cCGGCGAGCCGugCaCGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 139657 0.74 0.350773
Target:  5'- aGCUGUgCGGCGCGUGCGgcGGCCGcuGCUg -3'
miRNA:   3'- cCGGCGaGCCGUGCACGU--CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 141633 0.74 0.36549
Target:  5'- uGGCgGCUCGGCgacggaggGCGgugGCGGuGCCGcgGCCg -3'
miRNA:   3'- -CCGgCGAGCCG--------UGCa--CGUC-CGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 19202 0.73 0.380627
Target:  5'- cGGCCGCUCuGCGCGagccGguGGUCGucuCCa -3'
miRNA:   3'- -CCGGCGAGcCGUGCa---CguCCGGCu--GG- -5'
16116 3' -61.7 NC_004065.1 + 94429 0.73 0.388351
Target:  5'- cGGCCGUcucccagCGGCGCGUGUguucgaaggAGGUgaCGGCCg -3'
miRNA:   3'- -CCGGCGa------GCCGUGCACG---------UCCG--GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 124907 0.73 0.396177
Target:  5'- cGCCGCguccagCGGCACGUcGUcGGCC-ACCa -3'
miRNA:   3'- cCGGCGa-----GCCGUGCA-CGuCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 168620 0.73 0.412131
Target:  5'- cGGCUGCUgGcGCugGUGCcgcGGGCgGAgCCg -3'
miRNA:   3'- -CCGGCGAgC-CGugCACG---UCCGgCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 31817 0.72 0.420255
Target:  5'- gGGCCuGC-CGGaCGCGgaguucaGGGCCGACCa -3'
miRNA:   3'- -CCGG-CGaGCC-GUGCacg----UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 121471 0.72 0.436791
Target:  5'- aGGUCGgUCGGCGCGUccGCGGGCgUGAa- -3'
miRNA:   3'- -CCGGCgAGCCGUGCA--CGUCCG-GCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.