miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 183838 0.7 0.552239
Target:  5'- uGUCGUUCGGCccccacgccgucGCGUGUuuGGCCGugGCCg -3'
miRNA:   3'- cCGGCGAGCCG------------UGCACGu-CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 139430 0.7 0.561566
Target:  5'- cGCUGCUCaaGGaCGCuaUGCGGGCgGACCu -3'
miRNA:   3'- cCGGCGAG--CC-GUGc-ACGUCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 69410 0.7 0.570934
Target:  5'- uGCCGaCggGGCGCcagGUGCGcGCCGACCu -3'
miRNA:   3'- cCGGC-GagCCGUG---CACGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 128407 0.7 0.570934
Target:  5'- gGGCCGagCGGCAgCGgcgGCGGcGCCG-CCa -3'
miRNA:   3'- -CCGGCgaGCCGU-GCa--CGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 116788 0.7 0.570934
Target:  5'- cGGuuGCgCGGCcacguACGUGUuGGCCGguACCg -3'
miRNA:   3'- -CCggCGaGCCG-----UGCACGuCCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 186877 0.7 0.570934
Target:  5'- cGCCGUcCGuGCGCGUGUcuuccgcGGCCGGCg -3'
miRNA:   3'- cCGGCGaGC-CGUGCACGu------CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 36120 0.7 0.58034
Target:  5'- gGGCCGCUgcCGGCGgcgguUGUGguGGuuGugUu -3'
miRNA:   3'- -CCGGCGA--GCCGU-----GCACguCCggCugG- -5'
16116 3' -61.7 NC_004065.1 + 66623 0.7 0.58034
Target:  5'- aGCCGCgggcugCGGCGC-UGCGuGGCgGACg -3'
miRNA:   3'- cCGGCGa-----GCCGUGcACGU-CCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 88028 0.7 0.58034
Target:  5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3'
miRNA:   3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 194457 0.7 0.58034
Target:  5'- aGCgGUUgGGCACG-GCGGcGCCG-CCg -3'
miRNA:   3'- cCGgCGAgCCGUGCaCGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 130476 0.7 0.58034
Target:  5'- cGGCCGUccgccgCGGCgagACG-GgAGcGCCGACCa -3'
miRNA:   3'- -CCGGCGa-----GCCG---UGCaCgUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 199918 0.69 0.589778
Target:  5'- aGGCCGC-CGGgGC-UGCAGcucucgcuaccGCUGGCCu -3'
miRNA:   3'- -CCGGCGaGCCgUGcACGUC-----------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 211146 0.69 0.589778
Target:  5'- uGGCCGUUCGGgGgGgaGCGGGCguGCCg -3'
miRNA:   3'- -CCGGCGAGCCgUgCa-CGUCCGgcUGG- -5'
16116 3' -61.7 NC_004065.1 + 98874 0.69 0.599243
Target:  5'- cGCCGCUCuacGgGCG-GCAGGuaGGCCg -3'
miRNA:   3'- cCGGCGAGc--CgUGCaCGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162164 0.69 0.607779
Target:  5'- cGGCCGC-CGGCuGCGgcGCAGcgucuucGCCGugCc -3'
miRNA:   3'- -CCGGCGaGCCG-UGCa-CGUC-------CGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 151525 0.69 0.608728
Target:  5'- aGGCCGCUgcCGGC-CGgGCGGuGUCGGgCg -3'
miRNA:   3'- -CCGGCGA--GCCGuGCaCGUC-CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 129024 0.69 0.617278
Target:  5'- cGGCCGaCUCGuGCguguacuACGUGUAccuGGCCuACCg -3'
miRNA:   3'- -CCGGC-GAGC-CG-------UGCACGU---CCGGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.