miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 151410 0.69 0.618229
Target:  5'- aGGCgGgUCGGU-CGgGguGGUCGACCu -3'
miRNA:   3'- -CCGgCgAGCCGuGCaCguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 192695 0.69 0.618229
Target:  5'- gGGCUGCUcCGGaugACGgaaGCuGGuGCCGACCg -3'
miRNA:   3'- -CCGGCGA-GCCg--UGCa--CG-UC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 159256 0.69 0.618229
Target:  5'- uGGCCGUgauguagGGCAgGgUGguGGCCG-CCg -3'
miRNA:   3'- -CCGGCGag-----CCGUgC-ACguCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 163431 0.69 0.627739
Target:  5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3'
miRNA:   3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151362 0.69 0.627739
Target:  5'- cGCCGCggcgcCGGC-CGcUGCGcuggcGGCCGAUCu -3'
miRNA:   3'- cCGGCGa----GCCGuGC-ACGU-----CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 142636 0.69 0.627739
Target:  5'- aGGCCGCUcgaucaacCGGCGgaUGCAgGGCCugcucugcGACCa -3'
miRNA:   3'- -CCGGCGA--------GCCGUgcACGU-CCGG--------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 145783 0.69 0.6363
Target:  5'- cGGgCGCUCGcacagauccucauGCACGU-CGGGCCgGACUu -3'
miRNA:   3'- -CCgGCGAGC-------------CGUGCAcGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 162575 0.69 0.6363
Target:  5'- cGCCGcCUCGGCcgacagguccgucGUGUGCGGGUCGAa- -3'
miRNA:   3'- cCGGC-GAGCCG-------------UGCACGUCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 96645 0.69 0.637251
Target:  5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3'
miRNA:   3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 30508 0.68 0.64676
Target:  5'- cGGCUGCgc-GCACGUgGC-GGCCG-CCg -3'
miRNA:   3'- -CCGGCGagcCGUGCA-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 577 0.68 0.64676
Target:  5'- gGGCUGg-CGGCAgcgccacccCGUGguGGCaGACCa -3'
miRNA:   3'- -CCGGCgaGCCGU---------GCACguCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 153464 0.68 0.656259
Target:  5'- cGCCGCUuuucugCGGCAUGUGUacgggGGGUgCGACa -3'
miRNA:   3'- cCGGCGA------GCCGUGCACG-----UCCG-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 33734 0.68 0.656259
Target:  5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3'
miRNA:   3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 125602 0.68 0.656259
Target:  5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3'
miRNA:   3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 111976 0.68 0.656259
Target:  5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3'
miRNA:   3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 113312 0.68 0.656259
Target:  5'- cGCCGCUCGcGCGcCGgacGCGGGaUCGAUg -3'
miRNA:   3'- cCGGCGAGC-CGU-GCa--CGUCC-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 146862 0.68 0.656259
Target:  5'- uGGuCUGCaUCGGCGCGUgaacGCGGG-CGGCa -3'
miRNA:   3'- -CC-GGCG-AGCCGUGCA----CGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 148836 0.68 0.656259
Target:  5'- -cUCGCUCGGcCACGagGC-GGCCG-CCg -3'
miRNA:   3'- ccGGCGAGCC-GUGCa-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 92463 0.68 0.665742
Target:  5'- -cCCGCcuuccgCGGCgAUGUGCcgggccagAGGCUGACCg -3'
miRNA:   3'- ccGGCGa-----GCCG-UGCACG--------UCCGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.