Results 81 - 100 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 229538 | 0.68 | 0.665742 |
Target: 5'- -uCCGCggacgCGGCGCGcgGCccggAGGCUGACUc -3' miRNA: 3'- ccGGCGa----GCCGUGCa-CG----UCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 120600 | 0.68 | 0.665742 |
Target: 5'- cGCCGCcagcgCGGCugGuUGUAGaGCC-ACCu -3' miRNA: 3'- cCGGCGa----GCCGugC-ACGUC-CGGcUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 86850 | 0.68 | 0.668582 |
Target: 5'- gGGCCGCUCGGCgGacaggaugaaguccuCGUcgucaucaccgacGCAGGUCGcggcGCCg -3' miRNA: 3'- -CCGGCGAGCCG-U---------------GCA-------------CGUCCGGC----UGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 58314 | 0.68 | 0.675201 |
Target: 5'- uGGuCCGUcaugaCGcGCAgCGUGCAGGCCagcuuaguGACCa -3' miRNA: 3'- -CC-GGCGa----GC-CGU-GCACGUCCGG--------CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 34374 | 0.68 | 0.675201 |
Target: 5'- cGCCGCUCGGCugcCG-GgAGGCgaGGCg -3' miRNA: 3'- cCGGCGAGCCGu--GCaCgUCCGg-CUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 51125 | 0.68 | 0.675201 |
Target: 5'- cGCCGauugcugCGGCACGUaGC-GGCgCGACUu -3' miRNA: 3'- cCGGCga-----GCCGUGCA-CGuCCG-GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 45542 | 0.68 | 0.675201 |
Target: 5'- cGCCGCggCGGCgGCG-GCAG-CCGcCCa -3' miRNA: 3'- cCGGCGa-GCCG-UGCaCGUCcGGCuGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 68838 | 0.68 | 0.675201 |
Target: 5'- aGUCGCagGuGCACGUGCAacucgccaGCUGACCg -3' miRNA: 3'- cCGGCGagC-CGUGCACGUc-------CGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 115043 | 0.68 | 0.676145 |
Target: 5'- cGGCCGCcagggccgagggcaaCGGCGCGcGCgAGGaCgCGGCCu -3' miRNA: 3'- -CCGGCGa--------------GCCGUGCaCG-UCC-G-GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 70531 | 0.68 | 0.68463 |
Target: 5'- aGCUGCa-GGCGCGccUGCAGGCgCGAg- -3' miRNA: 3'- cCGGCGagCCGUGC--ACGUCCG-GCUgg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 15897 | 0.68 | 0.68463 |
Target: 5'- -aUCGCguccuuuuauugUCGGCGCGUGCGa-CCGGCCg -3' miRNA: 3'- ccGGCG------------AGCCGUGCACGUccGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 78858 | 0.68 | 0.68463 |
Target: 5'- gGGCgGC-CGGCGCGccagcucGCGGucGCCGACg -3' miRNA: 3'- -CCGgCGaGCCGUGCa------CGUC--CGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 6744 | 0.68 | 0.68463 |
Target: 5'- aGCCGCggCGGCACu--CGGGUCGGuCCu -3' miRNA: 3'- cCGGCGa-GCCGUGcacGUCCGGCU-GG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 188657 | 0.68 | 0.68463 |
Target: 5'- -uCCGCUCgagGGCGCGcgGCGGGagaCGACg -3' miRNA: 3'- ccGGCGAG---CCGUGCa-CGUCCg--GCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 4402 | 0.68 | 0.68463 |
Target: 5'- uGCUGUUCGGagcgguggcCACG-GCGGGCCuGACg -3' miRNA: 3'- cCGGCGAGCC---------GUGCaCGUCCGG-CUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 136060 | 0.68 | 0.68463 |
Target: 5'- cGGCgGCUUcuGCGCGaccuuccagcUGCAGGuaGACCa -3' miRNA: 3'- -CCGgCGAGc-CGUGC----------ACGUCCggCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 169361 | 0.68 | 0.68463 |
Target: 5'- gGGCCgucugucaGCUCGaCGCGUGCGuGGCgcggggcaacaCGGCCg -3' miRNA: 3'- -CCGG--------CGAGCcGUGCACGU-CCG-----------GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 98647 | 0.68 | 0.68463 |
Target: 5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3' miRNA: 3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 139899 | 0.68 | 0.68557 |
Target: 5'- uGGCCGCggggccuccggccggCGGCGCcaGCGGGuuGAa- -3' miRNA: 3'- -CCGGCGa--------------GCCGUGcaCGUCCggCUgg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 164653 | 0.68 | 0.694021 |
Target: 5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3' miRNA: 3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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