Results 21 - 40 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 157109 | 0.66 | 0.775651 |
Target: 5'- cGGCCGCggaGGCGCGacucGCgaacgAGGUCGAg- -3' miRNA: 3'- -CCGGCGag-CCGUGCa---CG-----UCCGGCUgg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 177477 | 0.66 | 0.775651 |
Target: 5'- --gCGCUCGGCGgGggcgcacgGCGGGgCCG-CCg -3' miRNA: 3'- ccgGCGAGCCGUgCa-------CGUCC-GGCuGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 127990 | 0.66 | 0.775651 |
Target: 5'- cGGCCGCcgCGGguCACcgaGguGGCCcGCCg -3' miRNA: 3'- -CCGGCGa-GCC--GUGca-CguCCGGcUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 168563 | 0.66 | 0.775651 |
Target: 5'- cGGCgGCggCGGCGacaGCGGGCgucuCGGCCc -3' miRNA: 3'- -CCGgCGa-GCCGUgcaCGUCCG----GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 140545 | 0.66 | 0.775651 |
Target: 5'- aGGCgGCgUCGGCuuccucuaGCG-GCGGGCUGGa- -3' miRNA: 3'- -CCGgCG-AGCCG--------UGCaCGUCCGGCUgg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 138751 | 0.66 | 0.775651 |
Target: 5'- aGGCCGUga---AgGUGCAGGUCGGCg -3' miRNA: 3'- -CCGGCGagccgUgCACGUCCGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 130159 | 0.66 | 0.767804 |
Target: 5'- aGGCCGUcgcuauccgcgacccCGGCGCcaucugGUGCgacgGGGCCGugCu -3' miRNA: 3'- -CCGGCGa--------------GCCGUG------CACG----UCCGGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 65550 | 0.66 | 0.766927 |
Target: 5'- --aCGCUgGGCGCGUcgccgGCGGGUCGcgaguACCu -3' miRNA: 3'- ccgGCGAgCCGUGCA-----CGUCCGGC-----UGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 127646 | 0.66 | 0.766927 |
Target: 5'- uGCCGCUgCGGCGCcgaggGC-GGCgGgACCa -3' miRNA: 3'- cCGGCGA-GCCGUGca---CGuCCGgC-UGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 229350 | 0.66 | 0.766927 |
Target: 5'- cGGUCGCUCGaccaGCGaGCGGGUgcucgcuacgcgCGGCCg -3' miRNA: 3'- -CCGGCGAGCcg--UGCaCGUCCG------------GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 123869 | 0.66 | 0.766927 |
Target: 5'- uGUCGCUCcGCACGcgccGCAGgugcGCCGugCa -3' miRNA: 3'- cCGGCGAGcCGUGCa---CGUC----CGGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 150361 | 0.66 | 0.766048 |
Target: 5'- gGGCaCGUUCGGCACcucccggGUcauCAGcGCCGACa -3' miRNA: 3'- -CCG-GCGAGCCGUG-------CAc--GUC-CGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 27805 | 0.66 | 0.766048 |
Target: 5'- cGGCaccaaGCUCugugucgGGUACcccccgggGUGguGGCUGGCCg -3' miRNA: 3'- -CCGg----CGAG-------CCGUG--------CACguCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 106983 | 0.66 | 0.761642 |
Target: 5'- cGGCCauGCUCGcCGCGUGCaucccugacgaguacGuGGCCG-CCa -3' miRNA: 3'- -CCGG--CGAGCcGUGCACG---------------U-CCGGCuGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 206823 | 0.66 | 0.758098 |
Target: 5'- uGCUGCgaauUCGG-GCGggaucgGCgGGGCCGACCu -3' miRNA: 3'- cCGGCG----AGCCgUGCa-----CG-UCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 107673 | 0.66 | 0.758098 |
Target: 5'- aGGUgaCGCU-GGCcuACGUGCGGaaGCUGGCCc -3' miRNA: 3'- -CCG--GCGAgCCG--UGCACGUC--CGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 123611 | 0.66 | 0.758098 |
Target: 5'- gGGuuGUUCGGguaGCGgaagaacucCAGGUCGGCCg -3' miRNA: 3'- -CCggCGAGCCg--UGCac-------GUCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 86369 | 0.66 | 0.758098 |
Target: 5'- aGGCU-CUCGGcCACGUcgggGUAGGUcuCGGCCu -3' miRNA: 3'- -CCGGcGAGCC-GUGCA----CGUCCG--GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 106151 | 0.66 | 0.758098 |
Target: 5'- cGG-CGCaccugCGGCGCGUGCGGaG-CGACa -3' miRNA: 3'- -CCgGCGa----GCCGUGCACGUC-CgGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 104102 | 0.66 | 0.758098 |
Target: 5'- -uCCGgUCGGCcugcACGUGCcgagcGGCCgGGCCu -3' miRNA: 3'- ccGGCgAGCCG----UGCACGu----CCGG-CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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