Results 61 - 80 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 23193 | 0.67 | 0.731066 |
Target: 5'- cGCCuuUCGGCugGUGUAu-CUGACCg -3' miRNA: 3'- cCGGcgAGCCGugCACGUccGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 223862 | 0.67 | 0.731066 |
Target: 5'- cGGCCGCcCGGCcCG-GCcaucucGGCCgGAUCg -3' miRNA: 3'- -CCGGCGaGCCGuGCaCGu-----CCGG-CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 116521 | 0.67 | 0.731066 |
Target: 5'- cGGCC--UCGGCgucaaagagACGUaCGGuGCCGACCg -3' miRNA: 3'- -CCGGcgAGCCG---------UGCAcGUC-CGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 162453 | 0.67 | 0.730152 |
Target: 5'- aGGCCccugcGCuUCGGCGaaggccuCGcGC-GGCCGGCCa -3' miRNA: 3'- -CCGG-----CG-AGCCGU-------GCaCGuCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 168695 | 0.67 | 0.727407 |
Target: 5'- gGGUCGCcgCGGCucucgccgucgaGUGCgAGGUCGACg -3' miRNA: 3'- -CCGGCGa-GCCGug----------CACG-UCCGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 52132 | 0.67 | 0.721897 |
Target: 5'- cGUCGUcCGuaACGUcuccaGCGGGCCGAUCa -3' miRNA: 3'- cCGGCGaGCcgUGCA-----CGUCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 93982 | 0.67 | 0.721897 |
Target: 5'- -uCCGUUCGGCACc--CuGGCCGGCUu -3' miRNA: 3'- ccGGCGAGCCGUGcacGuCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 26906 | 0.67 | 0.721897 |
Target: 5'- aGGCCGCUCGaccGCACGccgGaccccgaagaAGGCUcaagGACCg -3' miRNA: 3'- -CCGGCGAGC---CGUGCa--Cg---------UCCGG----CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 121694 | 0.67 | 0.721897 |
Target: 5'- uGCCGCUCGGCAa--GUAaacGuuGACCg -3' miRNA: 3'- cCGGCGAGCCGUgcaCGUc--CggCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 108660 | 0.67 | 0.721897 |
Target: 5'- uGCCGCU-GGCGCccGUGCGGaUgGACCu -3' miRNA: 3'- cCGGCGAgCCGUG--CACGUCcGgCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 129719 | 0.67 | 0.720055 |
Target: 5'- uGGCUGCgcgaagacaucgCGGCuCGUGCgAGGUgGGCg -3' miRNA: 3'- -CCGGCGa-----------GCCGuGCACG-UCCGgCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 101001 | 0.67 | 0.716363 |
Target: 5'- uGGUCGCUuugagguugaugacgCGGUugGUGUugaAGGCauugaCGGCCa -3' miRNA: 3'- -CCGGCGA---------------GCCGugCACG---UCCG-----GCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 119836 | 0.67 | 0.712662 |
Target: 5'- cGGgCGg-CGGCGCGUcGC-GGCCG-CCg -3' miRNA: 3'- -CCgGCgaGCCGUGCA-CGuCCGGCuGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 33988 | 0.67 | 0.712662 |
Target: 5'- uGGCucgCGCUCauGCACGUGguGGcCCGAg- -3' miRNA: 3'- -CCG---GCGAGc-CGUGCACguCC-GGCUgg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 71300 | 0.67 | 0.712662 |
Target: 5'- uGGCCGCgcuggucGCACGU-CGGGCgcgcaGACCa -3' miRNA: 3'- -CCGGCGagc----CGUGCAcGUCCGg----CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 39646 | 0.67 | 0.712662 |
Target: 5'- aGCUGCgagccugaaGGCuACG-GguGGCUGACCa -3' miRNA: 3'- cCGGCGag-------CCG-UGCaCguCCGGCUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 110390 | 0.67 | 0.712662 |
Target: 5'- aGGCCGUUCGaaCACGc-CAcGGCCGACg -3' miRNA: 3'- -CCGGCGAGCc-GUGCacGU-CCGGCUGg -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 206794 | 0.67 | 0.712662 |
Target: 5'- uGCCGCUCGuGuCGCGUcCAGaGuCCGugCg -3' miRNA: 3'- cCGGCGAGC-C-GUGCAcGUC-C-GGCugG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 109435 | 0.67 | 0.711735 |
Target: 5'- aGCCGCgcuggCGGCGCGUGUAucGCCucacgcaGAUCg -3' miRNA: 3'- cCGGCGa----GCCGUGCACGUc-CGG-------CUGG- -5' |
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16116 | 3' | -61.7 | NC_004065.1 | + | 164550 | 0.67 | 0.703367 |
Target: 5'- cGCUGUgUCGaGC-CGgcgGCGGcGCCGACCg -3' miRNA: 3'- cCGGCG-AGC-CGuGCa--CGUC-CGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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