miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 7 0.66 0.801131
Target:  5'- cGGCCGUcUGaGUGCGcGCGGGCCc-CCg -3'
miRNA:   3'- -CCGGCGaGC-CGUGCaCGUCCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 78 0.67 0.749174
Target:  5'- uGCCGCggcgcccucggCGGCAaaaaaGUGCAGcCCGcCCa -3'
miRNA:   3'- cCGGCGa----------GCCGUg----CACGUCcGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 489 0.66 0.801131
Target:  5'- gGGCCGCgCGcCGCGUccGCGGGaaGGCg -3'
miRNA:   3'- -CCGGCGaGCcGUGCA--CGUCCggCUGg -5'
16116 3' -61.7 NC_004065.1 + 577 0.68 0.64676
Target:  5'- gGGCUGg-CGGCAgcgccacccCGUGguGGCaGACCa -3'
miRNA:   3'- -CCGGCgaGCCGU---------GCACguCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 4402 0.68 0.68463
Target:  5'- uGCUGUUCGGagcgguggcCACG-GCGGGCCuGACg -3'
miRNA:   3'- cCGGCGAGCC---------GUGCaCGUCCGG-CUGg -5'
16116 3' -61.7 NC_004065.1 + 6744 0.68 0.68463
Target:  5'- aGCCGCggCGGCACu--CGGGUCGGuCCu -3'
miRNA:   3'- cCGGCGa-GCCGUGcacGUCCGGCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 15897 0.68 0.68463
Target:  5'- -aUCGCguccuuuuauugUCGGCGCGUGCGa-CCGGCCg -3'
miRNA:   3'- ccGGCG------------AGCCGUGCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 19202 0.73 0.380627
Target:  5'- cGGCCGCUCuGCGCGagccGguGGUCGucuCCa -3'
miRNA:   3'- -CCGGCGAGcCGUGCa---CguCCGGCu--GG- -5'
16116 3' -61.7 NC_004065.1 + 21964 0.71 0.479697
Target:  5'- gGGCCGUcgUCGGCAgGacgGUgaGGGCCG-CCa -3'
miRNA:   3'- -CCGGCG--AGCCGUgCa--CG--UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 22016 0.66 0.775651
Target:  5'- cGCCGC-CGGCacuaacccggccACGgccccggGCAGGCCG-Cg -3'
miRNA:   3'- cCGGCGaGCCG------------UGCa------CGUCCGGCuGg -5'
16116 3' -61.7 NC_004065.1 + 22387 0.67 0.703367
Target:  5'- cGGCCGCgugCGGCAUGgaGCugucccuGGUC-ACCg -3'
miRNA:   3'- -CCGGCGa--GCCGUGCa-CGu------CCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 23193 0.67 0.731066
Target:  5'- cGCCuuUCGGCugGUGUAu-CUGACCg -3'
miRNA:   3'- cCGGcgAGCCGugCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 25592 0.66 0.792761
Target:  5'- aGGCgGCUgaGCA---GCAGGCCGAUCu -3'
miRNA:   3'- -CCGgCGAgcCGUgcaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 26906 0.67 0.721897
Target:  5'- aGGCCGCUCGaccGCACGccgGaccccgaagaAGGCUcaagGACCg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCa--Cg---------UCCGG----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 27805 0.66 0.766048
Target:  5'- cGGCaccaaGCUCugugucgGGUACcccccgggGUGguGGCUGGCCg -3'
miRNA:   3'- -CCGg----CGAG-------CCGUG--------CACguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 28540 0.67 0.749174
Target:  5'- -aCCGCg-GGC-CGU-CGGGUCGACCg -3'
miRNA:   3'- ccGGCGagCCGuGCAcGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 30152 0.75 0.302637
Target:  5'- cGGCCGCUCGuGC-UGUGCGGcaCCGACg -3'
miRNA:   3'- -CCGGCGAGC-CGuGCACGUCc-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 30508 0.68 0.64676
Target:  5'- cGGCUGCgc-GCACGUgGC-GGCCG-CCg -3'
miRNA:   3'- -CCGGCGagcCGUGCA-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 31098 0.66 0.784265
Target:  5'- uGGCCGCcagggUGGaGCGgGCAGGCaCcACCg -3'
miRNA:   3'- -CCGGCGa----GCCgUGCaCGUCCG-GcUGG- -5'
16116 3' -61.7 NC_004065.1 + 31707 0.68 0.694021
Target:  5'- uGGCCGUuccgCGGCAUGUGCGaccCCGAg- -3'
miRNA:   3'- -CCGGCGa---GCCGUGCACGUcc-GGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.