miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 66144 0.76 0.254046
Target:  5'- gGGCCGCggacCGGCGCcaGCuGGCCGAgCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGcaCGuCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 66623 0.7 0.58034
Target:  5'- aGCCGCgggcugCGGCGC-UGCGuGGCgGACg -3'
miRNA:   3'- cCGGCGa-----GCCGUGcACGU-CCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 66645 0.66 0.755431
Target:  5'- cGGCU--UCGGCGCG-GUGGGCgcccggcgaguguuCGACCa -3'
miRNA:   3'- -CCGGcgAGCCGUGCaCGUCCG--------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 68790 0.71 0.479697
Target:  5'- aGGCCGUgUCGGagaACGUGCGGGCgCuGCg -3'
miRNA:   3'- -CCGGCG-AGCCg--UGCACGUCCG-GcUGg -5'
16116 3' -61.7 NC_004065.1 + 68838 0.68 0.675201
Target:  5'- aGUCGCagGuGCACGUGCAacucgccaGCUGACCg -3'
miRNA:   3'- cCGGCGagC-CGUGCACGUc-------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 69410 0.7 0.570934
Target:  5'- uGCCGaCggGGCGCcagGUGCGcGCCGACCu -3'
miRNA:   3'- cCGGC-GagCCGUG---CACGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 70531 0.68 0.68463
Target:  5'- aGCUGCa-GGCGCGccUGCAGGCgCGAg- -3'
miRNA:   3'- cCGGCGagCCGUGC--ACGUCCG-GCUgg -5'
16116 3' -61.7 NC_004065.1 + 71300 0.67 0.712662
Target:  5'- uGGCCGCgcuggucGCACGU-CGGGCgcgcaGACCa -3'
miRNA:   3'- -CCGGCGagc----CGUGCAcGUCCGg----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 72660 0.67 0.73744
Target:  5'- cGGCCGauacCGGCugauCGUGCGGcaccuggagaaccuGCCGAgCg -3'
miRNA:   3'- -CCGGCga--GCCGu---GCACGUC--------------CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 74862 0.67 0.749174
Target:  5'- aGGCgGCggUGGUagACGgGCAGGUCGcaGCCg -3'
miRNA:   3'- -CCGgCGa-GCCG--UGCaCGUCCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 78657 0.66 0.758098
Target:  5'- cGGCCGC-CaGCGCa-GC-GGCCGGCg -3'
miRNA:   3'- -CCGGCGaGcCGUGcaCGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 78858 0.68 0.68463
Target:  5'- gGGCgGC-CGGCGCGccagcucGCGGucGCCGACg -3'
miRNA:   3'- -CCGgCGaGCCGUGCa------CGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 80368 0.78 0.197907
Target:  5'- cGGUcaacgCGCUgCGGCGCGUGCAGGgCCuGCCg -3'
miRNA:   3'- -CCG-----GCGA-GCCGUGCACGUCC-GGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 80803 0.71 0.516361
Target:  5'- cGGCgGCggCGGCAgCGggagcagcgacagcaGCAGGCCGAgCg -3'
miRNA:   3'- -CCGgCGa-GCCGU-GCa--------------CGUCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 83378 0.66 0.792761
Target:  5'- uGCCuCaugUCGGCguaGUGCAGGUCGAUa -3'
miRNA:   3'- cCGGcG---AGCCGug-CACGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 83455 0.67 0.743776
Target:  5'- cGGCaCGagCGGCAccuuacccgcgacgcCGacgaugucggGCAGGCCGACCa -3'
miRNA:   3'- -CCG-GCgaGCCGU---------------GCa---------CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 86369 0.66 0.758098
Target:  5'- aGGCU-CUCGGcCACGUcgggGUAGGUcuCGGCCu -3'
miRNA:   3'- -CCGGcGAGCC-GUGCA----CGUCCG--GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 86850 0.68 0.668582
Target:  5'- gGGCCGCUCGGCgGacaggaugaaguccuCGUcgucaucaccgacGCAGGUCGcggcGCCg -3'
miRNA:   3'- -CCGGCGAGCCG-U---------------GCA-------------CGUCCGGC----UGG- -5'
16116 3' -61.7 NC_004065.1 + 87242 0.71 0.488526
Target:  5'- uGGCCGCcccCGGCGCcaccaccaGCAGGCCGuCg -3'
miRNA:   3'- -CCGGCGa--GCCGUGca------CGUCCGGCuGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.