miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 88028 0.7 0.58034
Target:  5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3'
miRNA:   3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 88930 0.74 0.343575
Target:  5'- uGCCGCUgaaGGCGCG-GCGGuaGCUGGCCa -3'
miRNA:   3'- cCGGCGAg--CCGUGCaCGUC--CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 92463 0.68 0.665742
Target:  5'- -cCCGCcuuccgCGGCgAUGUGCcgggccagAGGCUGACCg -3'
miRNA:   3'- ccGGCGa-----GCCG-UGCACG--------UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 93982 0.67 0.721897
Target:  5'- -uCCGUUCGGCACc--CuGGCCGGCUu -3'
miRNA:   3'- ccGGCGAGCCGUGcacGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 94384 0.67 0.731066
Target:  5'- cGGCCGCggcgagcugUCGGCugGUGgc-GCCGuagACCc -3'
miRNA:   3'- -CCGGCG---------AGCCGugCACgucCGGC---UGG- -5'
16116 3' -61.7 NC_004065.1 + 94429 0.73 0.388351
Target:  5'- cGGCCGUcucccagCGGCGCGUGUguucgaaggAGGUgaCGGCCg -3'
miRNA:   3'- -CCGGCGa------GCCGUGCACG---------UCCG--GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 96645 0.69 0.637251
Target:  5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3'
miRNA:   3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 98647 0.68 0.68463
Target:  5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 98874 0.69 0.599243
Target:  5'- cGCCGCUCuacGgGCG-GCAGGuaGGCCg -3'
miRNA:   3'- cCGGCGAGc--CgUGCaCGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 99107 0.67 0.75007
Target:  5'- cGGCCGUauaaaccccguuugaCGGCAacgcagGUGC-GGCCGACg -3'
miRNA:   3'- -CCGGCGa--------------GCCGUg-----CACGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 100031 0.66 0.784265
Target:  5'- cGCUGcCUCGGgGCGguauccuccGCAGaGCCuGACCc -3'
miRNA:   3'- cCGGC-GAGCCgUGCa--------CGUC-CGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 101001 0.67 0.716363
Target:  5'- uGGUCGCUuugagguugaugacgCGGUugGUGUugaAGGCauugaCGGCCa -3'
miRNA:   3'- -CCGGCGA---------------GCCGugCACG---UCCG-----GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 103383 0.67 0.740161
Target:  5'- cGCCGUcaacaCGGUguuGCGUGCGgugaaaaacacGGCCGACg -3'
miRNA:   3'- cCGGCGa----GCCG---UGCACGU-----------CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 104102 0.66 0.758098
Target:  5'- -uCCGgUCGGCcugcACGUGCcgagcGGCCgGGCCu -3'
miRNA:   3'- ccGGCgAGCCG----UGCACGu----CCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 104897 0.67 0.731066
Target:  5'- cGGCUggGCgaCGGCGCG-GUGGuGCCGGCg -3'
miRNA:   3'- -CCGG--CGa-GCCGUGCaCGUC-CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 105429 0.66 0.784265
Target:  5'- uGGCCGC---GCugGUGCGGGacguggCGACg -3'
miRNA:   3'- -CCGGCGagcCGugCACGUCCg-----GCUGg -5'
16116 3' -61.7 NC_004065.1 + 106151 0.66 0.758098
Target:  5'- cGG-CGCaccugCGGCGCGUGCGGaG-CGACa -3'
miRNA:   3'- -CCgGCGa----GCCGUGCACGUC-CgGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.