miRNA display CGI


Results 81 - 100 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 106983 0.66 0.761642
Target:  5'- cGGCCauGCUCGcCGCGUGCaucccugacgaguacGuGGCCG-CCa -3'
miRNA:   3'- -CCGG--CGAGCcGUGCACG---------------U-CCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 107511 0.66 0.779111
Target:  5'- -aCCGCUCGcacgaggagguGCGCGcggcgaccgcccagcUGCGGGUCGugCg -3'
miRNA:   3'- ccGGCGAGC-----------CGUGC---------------ACGUCCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 107673 0.66 0.758098
Target:  5'- aGGUgaCGCU-GGCcuACGUGCGGaaGCUGGCCc -3'
miRNA:   3'- -CCG--GCGAgCCG--UGCACGUC--CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 107766 0.66 0.784265
Target:  5'- aGGUCGgugUCGGCGCGggaGCAGcGgCGACa -3'
miRNA:   3'- -CCGGCg--AGCCGUGCa--CGUC-CgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 107804 0.67 0.703367
Target:  5'- uGGCCGUg-GGCGa--GCGGGCC-ACCa -3'
miRNA:   3'- -CCGGCGagCCGUgcaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 108660 0.67 0.721897
Target:  5'- uGCCGCU-GGCGCccGUGCGGaUgGACCu -3'
miRNA:   3'- cCGGCGAgCCGUG--CACGUCcGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 108811 0.7 0.533734
Target:  5'- cGGCCGUUCaGcCGCGgcaaCAGGCUGACg -3'
miRNA:   3'- -CCGGCGAGcC-GUGCac--GUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 109435 0.67 0.711735
Target:  5'- aGCCGCgcuggCGGCGCGUGUAucGCCucacgcaGAUCg -3'
miRNA:   3'- cCGGCGa----GCCGUGCACGUc-CGG-------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 110390 0.67 0.712662
Target:  5'- aGGCCGUUCGaaCACGc-CAcGGCCGACg -3'
miRNA:   3'- -CCGGCGAGCc-GUGCacGU-CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 110428 0.71 0.514546
Target:  5'- cGCCGC-CGGCguccugcACGUcCAGGCCaGCCg -3'
miRNA:   3'- cCGGCGaGCCG-------UGCAcGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 111976 0.68 0.656259
Target:  5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3'
miRNA:   3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 113312 0.68 0.656259
Target:  5'- cGCCGCUCGcGCGcCGgacGCGGGaUCGAUg -3'
miRNA:   3'- cCGGCGAGC-CGU-GCa--CGUCC-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 115043 0.68 0.676145
Target:  5'- cGGCCGCcagggccgagggcaaCGGCGCGcGCgAGGaCgCGGCCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGCaCG-UCC-G-GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 115911 0.66 0.758098
Target:  5'- gGGCCGUcgUCGGCcuCGgccgGCAGcucGCUGGCUu -3'
miRNA:   3'- -CCGGCG--AGCCGu-GCa---CGUC---CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 116521 0.67 0.731066
Target:  5'- cGGCC--UCGGCgucaaagagACGUaCGGuGCCGACCg -3'
miRNA:   3'- -CCGGcgAGCCG---------UGCAcGUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 116788 0.7 0.570934
Target:  5'- cGGuuGCgCGGCcacguACGUGUuGGCCGguACCg -3'
miRNA:   3'- -CCggCGaGCCG-----UGCACGuCCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 117400 0.75 0.298757
Target:  5'- cGGCCGCgcgcgcugggcucgCGGCGCGgagugGCA-GCCGAUCg -3'
miRNA:   3'- -CCGGCGa-------------GCCGUGCa----CGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 118194 0.74 0.350773
Target:  5'- cGCCGUUCGGUugGcGC-GGCUGACg -3'
miRNA:   3'- cCGGCGAGCCGugCaCGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 119009 0.7 0.542961
Target:  5'- gGGCCGCguggUUGGaCGCGUGguaCAuGGCCGugCu -3'
miRNA:   3'- -CCGGCG----AGCC-GUGCAC---GU-CCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 119836 0.67 0.712662
Target:  5'- cGGgCGg-CGGCGCGUcGC-GGCCG-CCg -3'
miRNA:   3'- -CCgGCgaGCCGUGCA-CGuCCGGCuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.