miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 189079 0.67 0.740161
Target:  5'- cGGaguuaCGCgaaacCGGCACGUGaaauaAGGCCGGu- -3'
miRNA:   3'- -CCg----GCGa----GCCGUGCACg----UCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 188657 0.68 0.68463
Target:  5'- -uCCGCUCgagGGCGCGcgGCGGGagaCGACg -3'
miRNA:   3'- ccGGCGAG---CCGUGCa-CGUCCg--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 186877 0.7 0.570934
Target:  5'- cGCCGUcCGuGCGCGUGUcuuccgcGGCCGGCg -3'
miRNA:   3'- cCGGCGaGC-CGUGCACGu------CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 183838 0.7 0.552239
Target:  5'- uGUCGUUCGGCccccacgccgucGCGUGUuuGGCCGugGCCg -3'
miRNA:   3'- cCGGCGAGCCG------------UGCACGu-CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 177477 0.66 0.775651
Target:  5'- --gCGCUCGGCGgGggcgcacgGCGGGgCCG-CCg -3'
miRNA:   3'- ccgGCGAGCCGUgCa-------CGUCC-GGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 169361 0.68 0.68463
Target:  5'- gGGCCgucugucaGCUCGaCGCGUGCGuGGCgcggggcaacaCGGCCg -3'
miRNA:   3'- -CCGG--------CGAGCcGUGCACGU-CCG-----------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 169262 0.66 0.792761
Target:  5'- aGGCCGC--GGCccUGUGC-GGCCucGACCu -3'
miRNA:   3'- -CCGGCGagCCGu-GCACGuCCGG--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 168969 0.68 0.694021
Target:  5'- cGGCCuCUCGGUgucCGUcaGCGcGGCgGACCu -3'
miRNA:   3'- -CCGGcGAGCCGu--GCA--CGU-CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 168695 0.67 0.727407
Target:  5'- gGGUCGCcgCGGCucucgccgucgaGUGCgAGGUCGACg -3'
miRNA:   3'- -CCGGCGa-GCCGug----------CACG-UCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 168620 0.73 0.412131
Target:  5'- cGGCUGCUgGcGCugGUGCcgcGGGCgGAgCCg -3'
miRNA:   3'- -CCGGCGAgC-CGugCACG---UCCGgCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 168563 0.66 0.775651
Target:  5'- cGGCgGCggCGGCGacaGCGGGCgucuCGGCCc -3'
miRNA:   3'- -CCGgCGa-GCCGUgcaCGUCCG----GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 166925 0.67 0.731066
Target:  5'- cGGCUGuCUCGGCACGcuacaGCgacuGGGCUGGu- -3'
miRNA:   3'- -CCGGC-GAGCCGUGCa----CG----UCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 166543 0.68 0.694021
Target:  5'- uGGCUGCgcgaCGGCGCcugGC-GGCUGcACCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGca-CGuCCGGC-UGG- -5'
16116 3' -61.7 NC_004065.1 + 164760 0.75 0.322622
Target:  5'- cGGCCGUgCGGUacgugGCGUGCAGGgaGAUCa -3'
miRNA:   3'- -CCGGCGaGCCG-----UGCACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 164653 0.68 0.694021
Target:  5'- gGGUCGCggcGCGCGUcGcCAGGUCGAUCc -3'
miRNA:   3'- -CCGGCGagcCGUGCA-C-GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 164550 0.67 0.703367
Target:  5'- cGCUGUgUCGaGC-CGgcgGCGGcGCCGACCg -3'
miRNA:   3'- cCGGCG-AGC-CGuGCa--CGUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 163431 0.69 0.627739
Target:  5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3'
miRNA:   3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162575 0.69 0.6363
Target:  5'- cGCCGcCUCGGCcgacagguccgucGUGUGCGGGUCGAa- -3'
miRNA:   3'- cCGGC-GAGCCG-------------UGCACGUCCGGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.