miRNA display CGI


Results 41 - 60 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 162453 0.67 0.730152
Target:  5'- aGGCCccugcGCuUCGGCGaaggccuCGcGC-GGCCGGCCa -3'
miRNA:   3'- -CCGG-----CG-AGCCGU-------GCaCGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162164 0.69 0.607779
Target:  5'- cGGCCGC-CGGCuGCGgcGCAGcgucuucGCCGugCc -3'
miRNA:   3'- -CCGGCGaGCCG-UGCa-CGUC-------CGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 159256 0.69 0.618229
Target:  5'- uGGCCGUgauguagGGCAgGgUGguGGCCG-CCg -3'
miRNA:   3'- -CCGGCGag-----CCGUgC-ACguCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 157340 0.7 0.542961
Target:  5'- gGGUCGCUCGGCAgGUucucCAGGUgccgcaCGAUCa -3'
miRNA:   3'- -CCGGCGAGCCGUgCAc---GUCCG------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 157109 0.66 0.775651
Target:  5'- cGGCCGCggaGGCGCGacucGCgaacgAGGUCGAg- -3'
miRNA:   3'- -CCGGCGag-CCGUGCa---CG-----UCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 153464 0.68 0.656259
Target:  5'- cGCCGCUuuucugCGGCAUGUGUacgggGGGUgCGACa -3'
miRNA:   3'- cCGGCGA------GCCGUGCACG-----UCCG-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 151525 0.69 0.608728
Target:  5'- aGGCCGCUgcCGGC-CGgGCGGuGUCGGgCg -3'
miRNA:   3'- -CCGGCGA--GCCGuGCaCGUC-CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 151410 0.69 0.618229
Target:  5'- aGGCgGgUCGGU-CGgGguGGUCGACCu -3'
miRNA:   3'- -CCGgCgAGCCGuGCaCguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151362 0.69 0.627739
Target:  5'- cGCCGCggcgcCGGC-CGcUGCGcuggcGGCCGAUCu -3'
miRNA:   3'- cCGGCGa----GCCGuGC-ACGU-----CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151146 0.67 0.749174
Target:  5'- cGCCGCgaugaucgUCGGCgaccGCGagcugGCGcGCCGGCCg -3'
miRNA:   3'- cCGGCG--------AGCCG----UGCa----CGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 150361 0.66 0.766048
Target:  5'- gGGCaCGUUCGGCACcucccggGUcauCAGcGCCGACa -3'
miRNA:   3'- -CCG-GCGAGCCGUG-------CAc--GUC-CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 149928 0.72 0.445197
Target:  5'- cGCgGCUCGGCAgGagGCGGGCUuGAUCc -3'
miRNA:   3'- cCGgCGAGCCGUgCa-CGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 149050 0.71 0.479697
Target:  5'- cGGgCGacgaCGGCgGCG-GCAGGCCGAUCg -3'
miRNA:   3'- -CCgGCga--GCCG-UGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 148836 0.68 0.656259
Target:  5'- -cUCGCUCGGcCACGagGC-GGCCG-CCg -3'
miRNA:   3'- ccGGCGAGCC-GUGCa-CGuCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 146862 0.68 0.656259
Target:  5'- uGGuCUGCaUCGGCGCGUgaacGCGGG-CGGCa -3'
miRNA:   3'- -CC-GGCG-AGCCGUGCA----CGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 145783 0.69 0.6363
Target:  5'- cGGgCGCUCGcacagauccucauGCACGU-CGGGCCgGACUu -3'
miRNA:   3'- -CCgGCGAGC-------------CGUGCAcGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 142636 0.69 0.627739
Target:  5'- aGGCCGCUcgaucaacCGGCGgaUGCAgGGCCugcucugcGACCa -3'
miRNA:   3'- -CCGGCGA--------GCCGUgcACGU-CCGG--------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 141633 0.74 0.36549
Target:  5'- uGGCgGCUCGGCgacggaggGCGgugGCGGuGCCGcgGCCg -3'
miRNA:   3'- -CCGgCGAGCCG--------UGCa--CGUC-CGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 140545 0.66 0.775651
Target:  5'- aGGCgGCgUCGGCuuccucuaGCG-GCGGGCUGGa- -3'
miRNA:   3'- -CCGgCG-AGCCG--------UGCaCGUCCGGCUgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.