miRNA display CGI


Results 61 - 80 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 139899 0.68 0.68557
Target:  5'- uGGCCGCggggccuccggccggCGGCGCcaGCGGGuuGAa- -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGcaCGUCCggCUgg -5'
16116 3' -61.7 NC_004065.1 + 139657 0.74 0.350773
Target:  5'- aGCUGUgCGGCGCGUGCGgcGGCCGcuGCUg -3'
miRNA:   3'- cCGGCGaGCCGUGCACGU--CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 139430 0.7 0.561566
Target:  5'- cGCUGCUCaaGGaCGCuaUGCGGGCgGACCu -3'
miRNA:   3'- cCGGCGAG--CC-GUGc-ACGUCCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 138751 0.66 0.775651
Target:  5'- aGGCCGUga---AgGUGCAGGUCGGCg -3'
miRNA:   3'- -CCGGCGagccgUgCACGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 138528 0.66 0.784265
Target:  5'- gGGCUGUUggcgcucgaacgCGGCACGaGCGgcGGCgGACUg -3'
miRNA:   3'- -CCGGCGA------------GCCGUGCaCGU--CCGgCUGG- -5'
16116 3' -61.7 NC_004065.1 + 138301 0.71 0.496537
Target:  5'- aGGCCGUggacgCGGCccugaucGCGUGCgAGGCCu-CCu -3'
miRNA:   3'- -CCGGCGa----GCCG-------UGCACG-UCCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 136674 0.71 0.470947
Target:  5'- gGGCgGgUCuGGC-CGgcgGCGGGCCGGCUc -3'
miRNA:   3'- -CCGgCgAG-CCGuGCa--CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 136060 0.68 0.68463
Target:  5'- cGGCgGCUUcuGCGCGaccuuccagcUGCAGGuaGACCa -3'
miRNA:   3'- -CCGgCGAGc-CGUGC----------ACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 132350 0.66 0.783409
Target:  5'- aGGUCgGCUUGuggaggcgguaGCACGgGCAGGCCGucgcgucGCCc -3'
miRNA:   3'- -CCGG-CGAGC-----------CGUGCaCGUCCGGC-------UGG- -5'
16116 3' -61.7 NC_004065.1 + 130476 0.7 0.58034
Target:  5'- cGGCCGUccgccgCGGCgagACG-GgAGcGCCGACCa -3'
miRNA:   3'- -CCGGCGa-----GCCG---UGCaCgUC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 130159 0.66 0.767804
Target:  5'- aGGCCGUcgcuauccgcgacccCGGCGCcaucugGUGCgacgGGGCCGugCu -3'
miRNA:   3'- -CCGGCGa--------------GCCGUG------CACG----UCCGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 130098 0.66 0.758098
Target:  5'- uGCCGUUCGGCGCccgcccuucuGUGUcuGUCGGCg -3'
miRNA:   3'- cCGGCGAGCCGUG----------CACGucCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 129719 0.67 0.720055
Target:  5'- uGGCUGCgcgaagacaucgCGGCuCGUGCgAGGUgGGCg -3'
miRNA:   3'- -CCGGCGa-----------GCCGuGCACG-UCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 129024 0.69 0.617278
Target:  5'- cGGCCGaCUCGuGCguguacuACGUGUAccuGGCCuACCg -3'
miRNA:   3'- -CCGGC-GAGC-CG-------UGCACGU---CCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 128407 0.7 0.570934
Target:  5'- gGGCCGagCGGCAgCGgcgGCGGcGCCG-CCa -3'
miRNA:   3'- -CCGGCgaGCCGU-GCa--CGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 127990 0.66 0.775651
Target:  5'- cGGCCGCcgCGGguCACcgaGguGGCCcGCCg -3'
miRNA:   3'- -CCGGCGa-GCC--GUGca-CguCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 127646 0.66 0.766927
Target:  5'- uGCCGCUgCGGCGCcgaggGC-GGCgGgACCa -3'
miRNA:   3'- cCGGCGA-GCCGUGca---CGuCCGgC-UGG- -5'
16116 3' -61.7 NC_004065.1 + 127226 0.66 0.792761
Target:  5'- cGGCCGCgaggaUCgGGCGCGgugGCGGGgaUGAUg -3'
miRNA:   3'- -CCGGCG-----AG-CCGUGCa--CGUCCg-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 125918 1.13 0.000785
Target:  5'- cGGCCGCUCGGCACGUGCAGGCCGACCg -3'
miRNA:   3'- -CCGGCGAGCCGUGCACGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 125602 0.68 0.656259
Target:  5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3'
miRNA:   3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.