miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 196821 0.7 0.524563
Target:  5'- gGGUCGUggucaccugCGGCAgGUGCGGG-CGACg -3'
miRNA:   3'- -CCGGCGa--------GCCGUgCACGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 55775 0.72 0.453694
Target:  5'- uGGCgGuCUCGGCGCcgaGCAGGCgaucgcggcugaCGACCa -3'
miRNA:   3'- -CCGgC-GAGCCGUGca-CGUCCG------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 32934 0.72 0.462278
Target:  5'- cGGCCGgUCGGCucccGCGcggaUGCGGGCguCGACg -3'
miRNA:   3'- -CCGGCgAGCCG----UGC----ACGUCCG--GCUGg -5'
16116 3' -61.7 NC_004065.1 + 21964 0.71 0.479697
Target:  5'- gGGCCGUcgUCGGCAgGacgGUgaGGGCCG-CCa -3'
miRNA:   3'- -CCGGCG--AGCCGUgCa--CG--UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 68790 0.71 0.479697
Target:  5'- aGGCCGUgUCGGagaACGUGCGGGCgCuGCg -3'
miRNA:   3'- -CCGGCG-AGCCg--UGCACGUCCG-GcUGg -5'
16116 3' -61.7 NC_004065.1 + 149050 0.71 0.479697
Target:  5'- cGGgCGacgaCGGCgGCG-GCAGGCCGAUCg -3'
miRNA:   3'- -CCgGCga--GCCG-UGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 42057 0.71 0.488526
Target:  5'- cGGCgUGCUgGcGCugGUGU-GGCUGACCu -3'
miRNA:   3'- -CCG-GCGAgC-CGugCACGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 138301 0.71 0.496537
Target:  5'- aGGCCGUggacgCGGCccugaucGCGUGCgAGGCCu-CCu -3'
miRNA:   3'- -CCGGCGa----GCCG-------UGCACG-UCCGGcuGG- -5'
16116 3' -61.7 NC_004065.1 + 110428 0.71 0.514546
Target:  5'- cGCCGC-CGGCguccugcACGUcCAGGCCaGCCg -3'
miRNA:   3'- cCGGCGaGCCG-------UGCAcGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 202734 0.72 0.445197
Target:  5'- cGGCCGuUUCGGCuCGUGUcccgAGcGCCGuCCg -3'
miRNA:   3'- -CCGGC-GAGCCGuGCACG----UC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 149928 0.72 0.445197
Target:  5'- cGCgGCUCGGCAgGagGCGGGCUuGAUCc -3'
miRNA:   3'- cCGgCGAGCCGUgCa-CGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 194820 0.72 0.444352
Target:  5'- cGCCGUggCGGUggccgccACGUucucCAGGCCGACCa -3'
miRNA:   3'- cCGGCGa-GCCG-------UGCAc---GUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 66144 0.76 0.254046
Target:  5'- gGGCCGCggacCGGCGCcaGCuGGCCGAgCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGcaCGuCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 120556 0.76 0.28362
Target:  5'- cGGCgGCggUCGGCGCGaGCGGGCgGgACCu -3'
miRNA:   3'- -CCGgCG--AGCCGUGCaCGUCCGgC-UGG- -5'
16116 3' -61.7 NC_004065.1 + 117400 0.75 0.298757
Target:  5'- cGGCCGCgcgcgcugggcucgCGGCGCGgagugGCA-GCCGAUCg -3'
miRNA:   3'- -CCGGCGa-------------GCCGUGCa----CGUcCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 118194 0.74 0.350773
Target:  5'- cGCCGUUCGGUugGcGC-GGCUGACg -3'
miRNA:   3'- cCGGCGAGCCGugCaCGuCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 19202 0.73 0.380627
Target:  5'- cGGCCGCUCuGCGCGagccGguGGUCGucuCCa -3'
miRNA:   3'- -CCGGCGAGcCGUGCa---CguCCGGCu--GG- -5'
16116 3' -61.7 NC_004065.1 + 124907 0.73 0.396177
Target:  5'- cGCCGCguccagCGGCACGUcGUcGGCC-ACCa -3'
miRNA:   3'- cCGGCGa-----GCCGUGCA-CGuCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 168620 0.73 0.412131
Target:  5'- cGGCUGCUgGcGCugGUGCcgcGGGCgGAgCCg -3'
miRNA:   3'- -CCGGCGAgC-CGugCACG---UCCGgCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 121471 0.72 0.436791
Target:  5'- aGGUCGgUCGGCGCGUccGCGGGCgUGAa- -3'
miRNA:   3'- -CCGGCgAGCCGUGCA--CGUCCG-GCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.