Results 61 - 80 of 188 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 110428 | 0.71 | 0.514546 |
Target: 5'- cGCCGC-CGGCguccugcACGUcCAGGCCaGCCg -3' miRNA: 3'- cCGGCGaGCCG-------UGCAcGUCCGGcUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 196821 | 0.7 | 0.524563 |
Target: 5'- gGGUCGUggucaccugCGGCAgGUGCGGG-CGACg -3' miRNA: 3'- -CCGGCGa--------GCCGUgCACGUCCgGCUGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 163431 | 0.69 | 0.627739 |
Target: 5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3' miRNA: 3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 145783 | 0.69 | 0.6363 |
Target: 5'- cGGgCGCUCGcacagauccucauGCACGU-CGGGCCgGACUu -3' miRNA: 3'- -CCgGCGAGC-------------CGUGCAcGUCCGG-CUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 96645 | 0.69 | 0.637251 |
Target: 5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3' miRNA: 3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 33734 | 0.68 | 0.656259 |
Target: 5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3' miRNA: 3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 125602 | 0.68 | 0.656259 |
Target: 5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3' miRNA: 3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 111976 | 0.68 | 0.656259 |
Target: 5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3' miRNA: 3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 113312 | 0.68 | 0.656259 |
Target: 5'- cGCCGCUCGcGCGcCGgacGCGGGaUCGAUg -3' miRNA: 3'- cCGGCGAGC-CGU-GCa--CGUCC-GGCUGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 92463 | 0.68 | 0.665742 |
Target: 5'- -cCCGCcuuccgCGGCgAUGUGCcgggccagAGGCUGACCg -3' miRNA: 3'- ccGGCGa-----GCCG-UGCACG--------UCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 67269 | 0.69 | 0.608728 |
Target: 5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3' miRNA: 3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 88028 | 0.7 | 0.58034 |
Target: 5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3' miRNA: 3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 119009 | 0.7 | 0.542961 |
Target: 5'- gGGCCGCguggUUGGaCGCGUGguaCAuGGCCGugCu -3' miRNA: 3'- -CCGGCG----AGCC-GUGCAC---GU-CCGGCugG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 139430 | 0.7 | 0.561566 |
Target: 5'- cGCUGCUCaaGGaCGCuaUGCGGGCgGACCu -3' miRNA: 3'- cCGGCGAG--CC-GUGc-ACGUCCGgCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 116788 | 0.7 | 0.570934 |
Target: 5'- cGGuuGCgCGGCcacguACGUGUuGGCCGguACCg -3' miRNA: 3'- -CCggCGaGCCG-----UGCACGuCCGGC--UGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 69410 | 0.7 | 0.570934 |
Target: 5'- uGCCGaCggGGCGCcagGUGCGcGCCGACCu -3' miRNA: 3'- cCGGC-GagCCGUG---CACGUcCGGCUGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 128407 | 0.7 | 0.570934 |
Target: 5'- gGGCCGagCGGCAgCGgcgGCGGcGCCG-CCa -3' miRNA: 3'- -CCGGCgaGCCGU-GCa--CGUC-CGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 66623 | 0.7 | 0.58034 |
Target: 5'- aGCCGCgggcugCGGCGC-UGCGuGGCgGACg -3' miRNA: 3'- cCGGCGa-----GCCGUGcACGU-CCGgCUGg -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 194457 | 0.7 | 0.58034 |
Target: 5'- aGCgGUUgGGCACG-GCGGcGCCG-CCg -3' miRNA: 3'- cCGgCGAgCCGUGCaCGUC-CGGCuGG- -5' |
|||||||
16116 | 3' | -61.7 | NC_004065.1 | + | 36120 | 0.7 | 0.58034 |
Target: 5'- gGGCCGCUgcCGGCGgcgguUGUGguGGuuGugUu -3' miRNA: 3'- -CCGGCGA--GCCGU-----GCACguCCggCugG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home