miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 70531 0.68 0.68463
Target:  5'- aGCUGCa-GGCGCGccUGCAGGCgCGAg- -3'
miRNA:   3'- cCGGCGagCCGUGC--ACGUCCG-GCUgg -5'
16116 3' -61.7 NC_004065.1 + 98647 0.68 0.68463
Target:  5'- cGGUCGCUCGuacGUACGcGCGGuuGCUGACg -3'
miRNA:   3'- -CCGGCGAGC---CGUGCaCGUC--CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 111976 0.68 0.656259
Target:  5'- cGGCCGCgaugaaGGCGCucgaGgGGGCCG-CCu -3'
miRNA:   3'- -CCGGCGag----CCGUGca--CgUCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 125602 0.68 0.656259
Target:  5'- uGGCCGU---GCGCG-GCGGGUCGAUg -3'
miRNA:   3'- -CCGGCGagcCGUGCaCGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 128407 0.7 0.570934
Target:  5'- gGGCCGagCGGCAgCGgcgGCGGcGCCG-CCa -3'
miRNA:   3'- -CCGGCgaGCCGU-GCa--CGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 66623 0.7 0.58034
Target:  5'- aGCCGCgggcugCGGCGC-UGCGuGGCgGACg -3'
miRNA:   3'- cCGGCGa-----GCCGUGcACGU-CCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 194457 0.7 0.58034
Target:  5'- aGCgGUUgGGCACG-GCGGcGCCG-CCg -3'
miRNA:   3'- cCGgCGAgCCGUGCaCGUC-CGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 36120 0.7 0.58034
Target:  5'- gGGCCGCUgcCGGCGgcgguUGUGguGGuuGugUu -3'
miRNA:   3'- -CCGGCGA--GCCGU-----GCACguCCggCugG- -5'
16116 3' -61.7 NC_004065.1 + 88028 0.7 0.58034
Target:  5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3'
miRNA:   3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 163431 0.69 0.627739
Target:  5'- cGCCGCggUGGCcgccgcCGUGCAG-UCGGCCa -3'
miRNA:   3'- cCGGCGa-GCCGu-----GCACGUCcGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 145783 0.69 0.6363
Target:  5'- cGGgCGCUCGcacagauccucauGCACGU-CGGGCCgGACUu -3'
miRNA:   3'- -CCgGCGAGC-------------CGUGCAcGUCCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 96645 0.69 0.637251
Target:  5'- cGGUCGCgagcucuuucUCGGCGuCG-GCGGGCUcGCCc -3'
miRNA:   3'- -CCGGCG----------AGCCGU-GCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 33734 0.68 0.656259
Target:  5'- cGGUgGCUCGGCccaGCGccuUGCAGGagucggaGGCCu -3'
miRNA:   3'- -CCGgCGAGCCG---UGC---ACGUCCgg-----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 164760 0.75 0.322622
Target:  5'- cGGCCGUgCGGUacgugGCGUGCAGGgaGAUCa -3'
miRNA:   3'- -CCGGCGaGCCG-----UGCACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 30152 0.75 0.302637
Target:  5'- cGGCCGCUCGuGC-UGUGCGGcaCCGACg -3'
miRNA:   3'- -CCGGCGAGC-CGuGCACGUCc-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 209575 0.66 0.792761
Target:  5'- cGGCUGCU-GGCggGCGUGC-GGUCagGAUCa -3'
miRNA:   3'- -CCGGCGAgCCG--UGCACGuCCGG--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.