miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 80368 0.78 0.197907
Target:  5'- cGGUcaacgCGCUgCGGCGCGUGCAGGgCCuGCCg -3'
miRNA:   3'- -CCG-----GCGA-GCCGUGCACGUCC-GGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 157340 0.7 0.542961
Target:  5'- gGGUCGCUCGGCAgGUucucCAGGUgccgcaCGAUCa -3'
miRNA:   3'- -CCGGCGAGCCGUgCAc---GUCCG------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 209575 0.66 0.792761
Target:  5'- cGGCUGCU-GGCggGCGUGC-GGUCagGAUCa -3'
miRNA:   3'- -CCGGCGAgCCG--UGCACGuCCGG--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 164760 0.75 0.322622
Target:  5'- cGGCCGUgCGGUacgugGCGUGCAGGgaGAUCa -3'
miRNA:   3'- -CCGGCGaGCCG-----UGCACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 139657 0.74 0.350773
Target:  5'- aGCUGUgCGGCGCGUGCGgcGGCCGcuGCUg -3'
miRNA:   3'- cCGGCGaGCCGUGCACGU--CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 141633 0.74 0.36549
Target:  5'- uGGCgGCUCGGCgacggaggGCGgugGCGGuGCCGcgGCCg -3'
miRNA:   3'- -CCGgCGAGCCG--------UGCa--CGUC-CGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 136674 0.71 0.470947
Target:  5'- gGGCgGgUCuGGC-CGgcgGCGGGCCGGCUc -3'
miRNA:   3'- -CCGgCgAG-CCGuGCa--CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 108811 0.7 0.533734
Target:  5'- cGGCCGUUCaGcCGCGgcaaCAGGCUGACg -3'
miRNA:   3'- -CCGGCGAGcC-GUGCac--GUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 87242 0.71 0.488526
Target:  5'- uGGCCGCcccCGGCGCcaccaccaGCAGGCCGuCg -3'
miRNA:   3'- -CCGGCGa--GCCGUGca------CGUCCGGCuGg -5'
16116 3' -61.7 NC_004065.1 + 31817 0.72 0.420255
Target:  5'- gGGCCuGC-CGGaCGCGgaguucaGGGCCGACCa -3'
miRNA:   3'- -CCGG-CGaGCC-GUGCacg----UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 80803 0.71 0.516361
Target:  5'- cGGCgGCggCGGCAgCGggagcagcgacagcaGCAGGCCGAgCg -3'
miRNA:   3'- -CCGgCGa-GCCGU-GCa--------------CGUCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 94429 0.73 0.388351
Target:  5'- cGGCCGUcucccagCGGCGCGUGUguucgaaggAGGUgaCGGCCg -3'
miRNA:   3'- -CCGGCGa------GCCGUGCACG---------UCCG--GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 59333 0.71 0.51909
Target:  5'- cGCCGCgggCGGCguGCGauuuccagcuccgagUGCGuGGUCGACCa -3'
miRNA:   3'- cCGGCGa--GCCG--UGC---------------ACGU-CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 183838 0.7 0.552239
Target:  5'- uGUCGUUCGGCccccacgccgucGCGUGUuuGGCCGugGCCg -3'
miRNA:   3'- cCGGCGAGCCG------------UGCACGu-CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 30152 0.75 0.302637
Target:  5'- cGGCCGCUCGuGC-UGUGCGGcaCCGACg -3'
miRNA:   3'- -CCGGCGAGC-CGuGCACGUCc-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 88930 0.74 0.343575
Target:  5'- uGCCGCUgaaGGCGCG-GCGGuaGCUGGCCa -3'
miRNA:   3'- cCGGCGAg--CCGUGCaCGUC--CGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.