miRNA display CGI


Results 21 - 40 of 188 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 31817 0.72 0.420255
Target:  5'- gGGCCuGC-CGGaCGCGgaguucaGGGCCGACCa -3'
miRNA:   3'- -CCGG-CGaGCC-GUGCacg----UCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 30152 0.75 0.302637
Target:  5'- cGGCCGCUCGuGC-UGUGCGGcaCCGACg -3'
miRNA:   3'- -CCGGCGAGC-CGuGCACGUCc-GGCUGg -5'
16116 3' -61.7 NC_004065.1 + 162575 0.69 0.6363
Target:  5'- cGCCGcCUCGGCcgacagguccgucGUGUGCGGGUCGAa- -3'
miRNA:   3'- cCGGC-GAGCCG-------------UGCACGUCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 151525 0.69 0.608728
Target:  5'- aGGCCGCUgcCGGC-CGgGCGGuGUCGGgCg -3'
miRNA:   3'- -CCGGCGA--GCCGuGCaCGUC-CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 157340 0.7 0.542961
Target:  5'- gGGUCGCUCGGCAgGUucucCAGGUgccgcaCGAUCa -3'
miRNA:   3'- -CCGGCGAGCCGUgCAc---GUCCG------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 162164 0.69 0.607779
Target:  5'- cGGCCGC-CGGCuGCGgcGCAGcgucuucGCCGugCc -3'
miRNA:   3'- -CCGGCGaGCCG-UGCa-CGUC-------CGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 183838 0.7 0.552239
Target:  5'- uGUCGUUCGGCccccacgccgucGCGUGUuuGGCCGugGCCg -3'
miRNA:   3'- cCGGCGAGCCG------------UGCACGu-CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 199918 0.69 0.589778
Target:  5'- aGGCCGC-CGGgGC-UGCAGcucucgcuaccGCUGGCCu -3'
miRNA:   3'- -CCGGCGaGCCgUGcACGUC-----------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 80803 0.71 0.516361
Target:  5'- cGGCgGCggCGGCAgCGggagcagcgacagcaGCAGGCCGAgCg -3'
miRNA:   3'- -CCGgCGa-GCCGU-GCa--------------CGUCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 136674 0.71 0.470947
Target:  5'- gGGCgGgUCuGGC-CGgcgGCGGGCCGGCUc -3'
miRNA:   3'- -CCGgCgAG-CCGuGCa--CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 139657 0.74 0.350773
Target:  5'- aGCUGUgCGGCGCGUGCGgcGGCCGcuGCUg -3'
miRNA:   3'- cCGGCGaGCCGUGCACGU--CCGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 146862 0.68 0.656259
Target:  5'- uGGuCUGCaUCGGCGCGUgaacGCGGG-CGGCa -3'
miRNA:   3'- -CC-GGCG-AGCCGUGCA----CGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 192695 0.69 0.618229
Target:  5'- gGGCUGCUcCGGaugACGgaaGCuGGuGCCGACCg -3'
miRNA:   3'- -CCGGCGA-GCCg--UGCa--CG-UC-CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 129024 0.69 0.617278
Target:  5'- cGGCCGaCUCGuGCguguacuACGUGUAccuGGCCuACCg -3'
miRNA:   3'- -CCGGC-GAGC-CG-------UGCACGU---CCGGcUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.