miRNA display CGI


Results 41 - 60 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 151362 0.69 0.627739
Target:  5'- cGCCGCggcgcCGGC-CGcUGCGcuggcGGCCGAUCu -3'
miRNA:   3'- cCGGCGa----GCCGuGC-ACGU-----CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 157340 0.7 0.542961
Target:  5'- gGGUCGCUCGGCAgGUucucCAGGUgccgcaCGAUCa -3'
miRNA:   3'- -CCGGCGAGCCGUgCAc---GUCCG------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 101427 0.75 0.301988
Target:  5'- gGGCgGCU-GGCGCGUGCGGaugcgccuucgccGCCGACg -3'
miRNA:   3'- -CCGgCGAgCCGUGCACGUC-------------CGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 142636 0.69 0.627739
Target:  5'- aGGCCGCUcgaucaacCGGCGgaUGCAgGGCCugcucugcGACCa -3'
miRNA:   3'- -CCGGCGA--------GCCGUgcACGU-CCGG--------CUGG- -5'
16116 3' -61.7 NC_004065.1 + 102013 0.75 0.296191
Target:  5'- aGGUCGUagUUGGCGCG-GCGGGCC-ACCu -3'
miRNA:   3'- -CCGGCG--AGCCGUGCaCGUCCGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 33988 0.67 0.712662
Target:  5'- uGGCucgCGCUCauGCACGUGguGGcCCGAg- -3'
miRNA:   3'- -CCG---GCGAGc-CGUGCACguCC-GGCUgg -5'
16116 3' -61.7 NC_004065.1 + 105084 0.75 0.322622
Target:  5'- uGCCGCgcaacgCGaaccugguGCGCGUGguGGCCGACg -3'
miRNA:   3'- cCGGCGa-----GC--------CGUGCACguCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 198994 0.68 0.694021
Target:  5'- uGG-CGCUCGGCAgGgccGC-GGCCGAg- -3'
miRNA:   3'- -CCgGCGAGCCGUgCa--CGuCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 139899 0.68 0.68557
Target:  5'- uGGCCGCggggccuccggccggCGGCGCcaGCGGGuuGAa- -3'
miRNA:   3'- -CCGGCGa--------------GCCGUGcaCGUCCggCUgg -5'
16116 3' -61.7 NC_004065.1 + 6744 0.68 0.68463
Target:  5'- aGCCGCggCGGCACu--CGGGUCGGuCCu -3'
miRNA:   3'- cCGGCGa-GCCGUGcacGUCCGGCU-GG- -5'
16116 3' -61.7 NC_004065.1 + 120600 0.68 0.665742
Target:  5'- cGCCGCcagcgCGGCugGuUGUAGaGCC-ACCu -3'
miRNA:   3'- cCGGCGa----GCCGugC-ACGUC-CGGcUGG- -5'
16116 3' -61.7 NC_004065.1 + 146862 0.68 0.656259
Target:  5'- uGGuCUGCaUCGGCGCGUgaacGCGGG-CGGCa -3'
miRNA:   3'- -CC-GGCG-AGCCGUGCA----CGUCCgGCUGg -5'
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 151410 0.69 0.618229
Target:  5'- aGGCgGgUCGGU-CGgGguGGUCGACCu -3'
miRNA:   3'- -CCGgCgAGCCGuGCaCguCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162164 0.69 0.607779
Target:  5'- cGGCCGC-CGGCuGCGgcGCAGcgucuucGCCGugCc -3'
miRNA:   3'- -CCGGCGaGCCG-UGCa-CGUC-------CGGCugG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 80803 0.71 0.516361
Target:  5'- cGGCgGCggCGGCAgCGggagcagcgacagcaGCAGGCCGAgCg -3'
miRNA:   3'- -CCGgCGa-GCCGU-GCa--------------CGUCCGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 136674 0.71 0.470947
Target:  5'- gGGCgGgUCuGGC-CGgcgGCGGGCCGGCUc -3'
miRNA:   3'- -CCGgCgAG-CCGuGCa--CGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 139657 0.74 0.350773
Target:  5'- aGCUGUgCGGCGCGUGCGgcGGCCGcuGCUg -3'
miRNA:   3'- cCGGCGaGCCGUGCACGU--CCGGC--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.