miRNA display CGI


Results 61 - 80 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 159723 0.69 0.637251
Target:  5'- cGGCCGUgUGGgGgGUGCugcugaAGGCCG-CCg -3'
miRNA:   3'- -CCGGCGaGCCgUgCACG------UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 153464 0.68 0.656259
Target:  5'- cGCCGCUuuucugCGGCAUGUGUacgggGGGUgCGACa -3'
miRNA:   3'- cCGGCGA------GCCGUGCACG-----UCCG-GCUGg -5'
16116 3' -61.7 NC_004065.1 + 164760 0.75 0.322622
Target:  5'- cGGCCGUgCGGUacgugGCGUGCAGGgaGAUCa -3'
miRNA:   3'- -CCGGCGaGCCG-----UGCACGUCCggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 141633 0.74 0.36549
Target:  5'- uGGCgGCUCGGCgacggaggGCGgugGCGGuGCCGcgGCCg -3'
miRNA:   3'- -CCGgCGAGCCG--------UGCa--CGUC-CGGC--UGG- -5'
16116 3' -61.7 NC_004065.1 + 41386 0.71 0.479697
Target:  5'- uGGUCGUggugUGGUACGUGCucGCCG-CCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGCACGucCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 59333 0.71 0.51909
Target:  5'- cGCCGCgggCGGCguGCGauuuccagcuccgagUGCGuGGUCGACCa -3'
miRNA:   3'- cCGGCGa--GCCG--UGC---------------ACGU-CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 186877 0.7 0.570934
Target:  5'- cGCCGUcCGuGCGCGUGUcuuccgcGGCCGGCg -3'
miRNA:   3'- cCGGCGaGC-CGUGCACGu------CCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 199918 0.69 0.589778
Target:  5'- aGGCCGC-CGGgGC-UGCAGcucucgcuaccGCUGGCCu -3'
miRNA:   3'- -CCGGCGaGCCgUGcACGUC-----------CGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 151525 0.69 0.608728
Target:  5'- aGGCCGCUgcCGGC-CGgGCGGuGUCGGgCg -3'
miRNA:   3'- -CCGGCGA--GCCGuGCaCGUC-CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 159256 0.69 0.618229
Target:  5'- uGGCCGUgauguagGGCAgGgUGguGGCCG-CCg -3'
miRNA:   3'- -CCGGCGag-----CCGUgC-ACguCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 130098 0.66 0.758098
Target:  5'- uGCCGUUCGGCGCccgcccuucuGUGUcuGUCGGCg -3'
miRNA:   3'- cCGGCGAGCCGUG----------CACGucCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 104102 0.66 0.758098
Target:  5'- -uCCGgUCGGCcugcACGUGCcgagcGGCCgGGCCu -3'
miRNA:   3'- ccGGCgAGCCG----UGCACGu----CCGG-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 4402 0.68 0.68463
Target:  5'- uGCUGUUCGGagcgguggcCACG-GCGGGCCuGACg -3'
miRNA:   3'- cCGGCGAGCC---------GUGCaCGUCCGG-CUGg -5'
16116 3' -61.7 NC_004065.1 + 15897 0.68 0.68463
Target:  5'- -aUCGCguccuuuuauugUCGGCGCGUGCGa-CCGGCCg -3'
miRNA:   3'- ccGGCG------------AGCCGUGCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 198994 0.68 0.694021
Target:  5'- uGG-CGCUCGGCAgGgccGC-GGCCGAg- -3'
miRNA:   3'- -CCgGCGAGCCGUgCa--CGuCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 33988 0.67 0.712662
Target:  5'- uGGCucgCGCUCauGCACGUGguGGcCCGAg- -3'
miRNA:   3'- -CCG---GCGAGc-CGUGCACguCC-GGCUgg -5'
16116 3' -61.7 NC_004065.1 + 101001 0.67 0.716363
Target:  5'- uGGUCGCUuugagguugaugacgCGGUugGUGUugaAGGCauugaCGGCCa -3'
miRNA:   3'- -CCGGCGA---------------GCCGugCACG---UCCG-----GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 168695 0.67 0.727407
Target:  5'- gGGUCGCcgCGGCucucgccgucgaGUGCgAGGUCGACg -3'
miRNA:   3'- -CCGGCGa-GCCGug----------CACG-UCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 94384 0.67 0.731066
Target:  5'- cGGCCGCggcgagcugUCGGCugGUGgc-GCCGuagACCc -3'
miRNA:   3'- -CCGGCG---------AGCCGugCACgucCGGC---UGG- -5'
16116 3' -61.7 NC_004065.1 + 78 0.67 0.749174
Target:  5'- uGCCGCggcgcccucggCGGCAaaaaaGUGCAGcCCGcCCa -3'
miRNA:   3'- cCGGCGa----------GCCGUg----CACGUCcGGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.