miRNA display CGI


Results 81 - 100 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 3' -61.7 NC_004065.1 + 198994 0.68 0.694021
Target:  5'- uGG-CGCUCGGCAgGgccGC-GGCCGAg- -3'
miRNA:   3'- -CCgGCGAGCCGUgCa--CGuCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 71300 0.67 0.712662
Target:  5'- uGGCCGCgcuggucGCACGU-CGGGCgcgcaGACCa -3'
miRNA:   3'- -CCGGCGagc----CGUGCAcGUCCGg----CUGG- -5'
16116 3' -61.7 NC_004065.1 + 129719 0.67 0.720055
Target:  5'- uGGCUGCgcgaagacaucgCGGCuCGUGCgAGGUgGGCg -3'
miRNA:   3'- -CCGGCGa-----------GCCGuGCACG-UCCGgCUGg -5'
16116 3' -61.7 NC_004065.1 + 23193 0.67 0.731066
Target:  5'- cGCCuuUCGGCugGUGUAu-CUGACCg -3'
miRNA:   3'- cCGGcgAGCCGugCACGUccGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 94384 0.67 0.731066
Target:  5'- cGGCCGCggcgagcugUCGGCugGUGgc-GCCGuagACCc -3'
miRNA:   3'- -CCGGCG---------AGCCGugCACgucCGGC---UGG- -5'
16116 3' -61.7 NC_004065.1 + 201682 0.66 0.758098
Target:  5'- aGGCUGCggCGGCACaacgcgGaCAGGCCcuguCCg -3'
miRNA:   3'- -CCGGCGa-GCCGUGca----C-GUCCGGcu--GG- -5'
16116 3' -61.7 NC_004065.1 + 170051 0.69 0.587888
Target:  5'- cGGCUGCUCGGCcgACGaagccgccaaccugGCGGGCaccacuccgggcuucUGGCCg -3'
miRNA:   3'- -CCGGCGAGCCG--UGCa-------------CGUCCG---------------GCUGG- -5'
16116 3' -61.7 NC_004065.1 + 184496 0.7 0.570934
Target:  5'- cGCCGCcgCGGCGcCG-GguGGCguaGACCg -3'
miRNA:   3'- cCGGCGa-GCCGU-GCaCguCCGg--CUGG- -5'
16116 3' -61.7 NC_004065.1 + 41386 0.71 0.479697
Target:  5'- uGGUCGUggugUGGUACGUGCucGCCG-CCg -3'
miRNA:   3'- -CCGGCGa---GCCGUGCACGucCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 151525 0.69 0.608728
Target:  5'- aGGCCGCUgcCGGC-CGgGCGGuGUCGGgCg -3'
miRNA:   3'- -CCGGCGA--GCCGuGCaCGUC-CGGCUgG- -5'
16116 3' -61.7 NC_004065.1 + 159256 0.69 0.618229
Target:  5'- uGGCCGUgauguagGGCAgGgUGguGGCCG-CCg -3'
miRNA:   3'- -CCGGCGag-----CCGUgC-ACguCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 162575 0.69 0.6363
Target:  5'- cGCCGcCUCGGCcgacagguccgucGUGUGCGGGUCGAa- -3'
miRNA:   3'- cCGGC-GAGCCG-------------UGCACGUCCGGCUgg -5'
16116 3' -61.7 NC_004065.1 + 83378 0.66 0.792761
Target:  5'- uGCCuCaugUCGGCguaGUGCAGGUCGAUa -3'
miRNA:   3'- cCGGcG---AGCCGug-CACGUCCGGCUGg -5'
16116 3' -61.7 NC_004065.1 + 59333 0.71 0.51909
Target:  5'- cGCCGCgggCGGCguGCGauuuccagcuccgagUGCGuGGUCGACCa -3'
miRNA:   3'- cCGGCGa--GCCG--UGC---------------ACGU-CCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 67269 0.69 0.608728
Target:  5'- cGGCCGUUcaaCGGCACG-GCGGagacGCagGACCu -3'
miRNA:   3'- -CCGGCGA---GCCGUGCaCGUC----CGg-CUGG- -5'
16116 3' -61.7 NC_004065.1 + 88028 0.7 0.58034
Target:  5'- uGCCGacgUUGcGCGCGaGCAGGUCGACUc -3'
miRNA:   3'- cCGGCg--AGC-CGUGCaCGUCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 21964 0.71 0.479697
Target:  5'- gGGCCGUcgUCGGCAgGacgGUgaGGGCCG-CCa -3'
miRNA:   3'- -CCGGCG--AGCCGUgCa--CG--UCCGGCuGG- -5'
16116 3' -61.7 NC_004065.1 + 121694 0.67 0.721897
Target:  5'- uGCCGCUCGGCAa--GUAaacGuuGACCg -3'
miRNA:   3'- cCGGCGAGCCGUgcaCGUc--CggCUGG- -5'
16116 3' -61.7 NC_004065.1 + 162453 0.67 0.730152
Target:  5'- aGGCCccugcGCuUCGGCGaaggccuCGcGC-GGCCGGCCa -3'
miRNA:   3'- -CCGG-----CG-AGCCGU-------GCaCGuCCGGCUGG- -5'
16116 3' -61.7 NC_004065.1 + 72660 0.67 0.73744
Target:  5'- cGGCCGauacCGGCugauCGUGCGGcaccuggagaaccuGCCGAgCg -3'
miRNA:   3'- -CCGGCga--GCCGu---GCACGUC--------------CGGCUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.