miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16116 5' -58.8 NC_004065.1 + 81551 0.65 0.884775
Target:  5'- cGGGGUacaugucGAGgaCGAUGcuaCCGCUCCAGa -3'
miRNA:   3'- -UUCCA-------CUCgaGCUGCag-GGCGAGGUC- -5'
16116 5' -58.8 NC_004065.1 + 68553 0.66 0.878694
Target:  5'- gGAGGUGA---CGGCGUCCCGaaggcCCGGa -3'
miRNA:   3'- -UUCCACUcgaGCUGCAGGGCga---GGUC- -5'
16116 5' -58.8 NC_004065.1 + 165097 0.66 0.878694
Target:  5'- uAGGcgccgucgucucUGAGg-CGGCGUCCCGC-CCGGc -3'
miRNA:   3'- uUCC------------ACUCgaGCUGCAGGGCGaGGUC- -5'
16116 5' -58.8 NC_004065.1 + 45084 0.66 0.878694
Target:  5'- gGAGGU-AGUUCGACGUgCaGCUCgGGg -3'
miRNA:   3'- -UUCCAcUCGAGCUGCAgGgCGAGgUC- -5'
16116 5' -58.8 NC_004065.1 + 157003 0.66 0.871744
Target:  5'- cGAGGUGAag--GGCGUCUCGCUCguGg -3'
miRNA:   3'- -UUCCACUcgagCUGCAGGGCGAGguC- -5'
16116 5' -58.8 NC_004065.1 + 93247 0.66 0.871744
Target:  5'- -cGGUGGGaUCGACGUgCCGa-CCGGa -3'
miRNA:   3'- uuCCACUCgAGCUGCAgGGCgaGGUC- -5'
16116 5' -58.8 NC_004065.1 + 96137 0.66 0.864595
Target:  5'- gAGGGUG-GCcCGuCGUUCCGC-CCGGc -3'
miRNA:   3'- -UUCCACuCGaGCuGCAGGGCGaGGUC- -5'
16116 5' -58.8 NC_004065.1 + 45926 0.66 0.849723
Target:  5'- uAGGGUcguaucGAGCcgCGGucCGUCCUGCUCUGGg -3'
miRNA:   3'- -UUCCA------CUCGa-GCU--GCAGGGCGAGGUC- -5'
16116 5' -58.8 NC_004065.1 + 54415 0.67 0.834119
Target:  5'- cAGGUGGGgaCGugGUuugugacgcaCCCaCUCCAGg -3'
miRNA:   3'- uUCCACUCgaGCugCA----------GGGcGAGGUC- -5'
16116 5' -58.8 NC_004065.1 + 131154 0.67 0.826059
Target:  5'- --cGUGGGCgaCGACGaccCCCGUUCCGGc -3'
miRNA:   3'- uucCACUCGa-GCUGCa--GGGCGAGGUC- -5'
16116 5' -58.8 NC_004065.1 + 116127 0.67 0.824427
Target:  5'- gGAGGU-AGCuggUCGGCGUCCUGCggcggcucggggCCGGg -3'
miRNA:   3'- -UUCCAcUCG---AGCUGCAGGGCGa-----------GGUC- -5'
16116 5' -58.8 NC_004065.1 + 1237 0.7 0.670333
Target:  5'- -uGGUGAGCUgugcucCGGCGguUCCCGCgUCCGu -3'
miRNA:   3'- uuCCACUCGA------GCUGC--AGGGCG-AGGUc -5'
16116 5' -58.8 NC_004065.1 + 32340 0.72 0.543234
Target:  5'- ----cGAGCUCGACGagcUCCCGCUUgGGg -3'
miRNA:   3'- uuccaCUCGAGCUGC---AGGGCGAGgUC- -5'
16116 5' -58.8 NC_004065.1 + 110187 0.74 0.424962
Target:  5'- -uGGUGGGCUCGACGaagaUCCUGCuggcgaguuuccUCCAGc -3'
miRNA:   3'- uuCCACUCGAGCUGC----AGGGCG------------AGGUC- -5'
16116 5' -58.8 NC_004065.1 + 43528 0.81 0.177022
Target:  5'- cAGGaaGAGUcgaUCGGCGUCCCGCUCCGGa -3'
miRNA:   3'- uUCCa-CUCG---AGCUGCAGGGCGAGGUC- -5'
16116 5' -58.8 NC_004065.1 + 125953 1.05 0.00412
Target:  5'- gAAGGUGAGCUCGACGUCCCGCUCCAGc -3'
miRNA:   3'- -UUCCACUCGAGCUGCAGGGCGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.