miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16117 5' -57.2 NC_004065.1 + 114907 0.66 0.923448
Target:  5'- aUCUCGGUGGcuccgggGGGUgGGgCGgcacauuuCUGGUCa -3'
miRNA:   3'- cAGAGCCACU-------UCCAgUCgGC--------GACCAG- -5'
16117 5' -57.2 NC_004065.1 + 189422 0.66 0.912931
Target:  5'- uUCUCGG-GAAGG-UAGCaGUUGGUa -3'
miRNA:   3'- cAGAGCCaCUUCCaGUCGgCGACCAg -5'
16117 5' -57.2 NC_004065.1 + 46902 0.66 0.912931
Target:  5'- ---aCGGcUGGAGGg-GGCCGCgaugGGUCa -3'
miRNA:   3'- cagaGCC-ACUUCCagUCGGCGa---CCAG- -5'
16117 5' -57.2 NC_004065.1 + 111141 0.66 0.911776
Target:  5'- gGUCUCGGUGGAgaccgccaucGGagAGCUGCgcuucgugucgcGGUCg -3'
miRNA:   3'- -CAGAGCCACUU----------CCagUCGGCGa-----------CCAG- -5'
16117 5' -57.2 NC_004065.1 + 56496 0.66 0.900987
Target:  5'- ---aCGGUGAugcGGGUCGcuauaCCGUUGGUCu -3'
miRNA:   3'- cagaGCCACU---UCCAGUc----GGCGACCAG- -5'
16117 5' -57.2 NC_004065.1 + 51187 0.66 0.900987
Target:  5'- cGUUUUGGUGGAGGgu-GgCGC-GGUCa -3'
miRNA:   3'- -CAGAGCCACUUCCaguCgGCGaCCAG- -5'
16117 5' -57.2 NC_004065.1 + 68238 0.67 0.894684
Target:  5'- cGUCggCGGUGAcgAGGacggacCGGCUGCUGG-Cg -3'
miRNA:   3'- -CAGa-GCCACU--UCCa-----GUCGGCGACCaG- -5'
16117 5' -57.2 NC_004065.1 + 75590 0.67 0.894684
Target:  5'- uGUCgcCGGcGggGGgaGGCCGCUGgGUCu -3'
miRNA:   3'- -CAGa-GCCaCuuCCagUCGGCGAC-CAG- -5'
16117 5' -57.2 NC_004065.1 + 98979 0.67 0.890798
Target:  5'- ----gGGUGAaacaccugcuccacaGGGUCGcccacacguuccGCCGCUGGUCu -3'
miRNA:   3'- cagagCCACU---------------UCCAGU------------CGGCGACCAG- -5'
16117 5' -57.2 NC_004065.1 + 110547 0.68 0.852452
Target:  5'- -aCUCGGUGAAGGU-GGaCGCUucggcGGUCc -3'
miRNA:   3'- caGAGCCACUUCCAgUCgGCGA-----CCAG- -5'
16117 5' -57.2 NC_004065.1 + 93790 0.68 0.844721
Target:  5'- cGUCgUCGGUGGAGGagaccuuccCAGCCccggcgacugGCUGGUg -3'
miRNA:   3'- -CAG-AGCCACUUCCa--------GUCGG----------CGACCAg -5'
16117 5' -57.2 NC_004065.1 + 36200 0.68 0.844721
Target:  5'- ---aUGGUGgcGGUuaCAGCCGCaccgUGGUCg -3'
miRNA:   3'- cagaGCCACuuCCA--GUCGGCG----ACCAG- -5'
16117 5' -57.2 NC_004065.1 + 122198 0.68 0.836808
Target:  5'- -cCUCGGUGggGGUgAuGuuGUaguUGGUCc -3'
miRNA:   3'- caGAGCCACuuCCAgU-CggCG---ACCAG- -5'
16117 5' -57.2 NC_004065.1 + 146121 0.68 0.823784
Target:  5'- ---aCGG-GAAGGUCgucaacuguuauucgAGaCCGCUGGUCg -3'
miRNA:   3'- cagaGCCaCUUCCAG---------------UC-GGCGACCAG- -5'
16117 5' -57.2 NC_004065.1 + 168020 0.68 0.819626
Target:  5'- cGUCUCGG-GccGGUUcuguguucgcgggGGCUGCUGGUg -3'
miRNA:   3'- -CAGAGCCaCuuCCAG-------------UCGGCGACCAg -5'
16117 5' -57.2 NC_004065.1 + 173372 0.69 0.767783
Target:  5'- cGUCgaaccgaCGGUGAAGGgugccgCGGCCGCUGc-- -3'
miRNA:   3'- -CAGa------GCCACUUCCa-----GUCGGCGACcag -5'
16117 5' -57.2 NC_004065.1 + 101526 0.7 0.758556
Target:  5'- cGUCgUCGGUGGAGGcggCAGCagcagcggCGCUGG-Ca -3'
miRNA:   3'- -CAG-AGCCACUUCCa--GUCG--------GCGACCaG- -5'
16117 5' -57.2 NC_004065.1 + 163602 0.71 0.691483
Target:  5'- aGUCaggUCGGUGAAGGUCGggauGCUGCgcgucuccucGGUCa -3'
miRNA:   3'- -CAG---AGCCACUUCCAGU----CGGCGa---------CCAG- -5'
16117 5' -57.2 NC_004065.1 + 7047 0.72 0.651941
Target:  5'- -gUUCGGUGAAGaaguuuGUCGGgaGCUGGUCg -3'
miRNA:   3'- caGAGCCACUUC------CAGUCggCGACCAG- -5'
16117 5' -57.2 NC_004065.1 + 223100 0.8 0.25621
Target:  5'- cGUCUUGGUGGAGGUUuagguccguAGCCGUcGGUCu -3'
miRNA:   3'- -CAGAGCCACUUCCAG---------UCGGCGaCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.