miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16118 3' -54.4 NC_004065.1 + 220221 0.66 0.983634
Target:  5'- aGCUGUGAGAugaacuugguAGUCCGCguUGuuaauUUGUa -3'
miRNA:   3'- -CGACGCUCU----------UCAGGCGguACu----AGCGc -5'
16118 3' -54.4 NC_004065.1 + 190277 0.66 0.983634
Target:  5'- cGCUGCGGaAAGUCgccuuCGUCGgcgauccGGUCGCGg -3'
miRNA:   3'- -CGACGCUcUUCAG-----GCGGUa------CUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 135489 0.66 0.983634
Target:  5'- gGCUcGCGc-AGGUUCGCCGUGAUCu-- -3'
miRNA:   3'- -CGA-CGCucUUCAGGCGGUACUAGcgc -5'
16118 3' -54.4 NC_004065.1 + 96114 0.66 0.98172
Target:  5'- cGCUGUagGAGAGGUCgCacuCCAUGAUCaCGu -3'
miRNA:   3'- -CGACG--CUCUUCAG-Gc--GGUACUAGcGC- -5'
16118 3' -54.4 NC_004065.1 + 159936 0.66 0.979643
Target:  5'- uGCUGCucgucgccucGggGUCCGCgCcuuugagGAUCGCGg -3'
miRNA:   3'- -CGACGcu--------CuuCAGGCG-Gua-----CUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 40692 0.66 0.979643
Target:  5'- -gUGgGAGAGcGUCUGCCAagacuuacUGAUgGCGu -3'
miRNA:   3'- cgACgCUCUU-CAGGCGGU--------ACUAgCGC- -5'
16118 3' -54.4 NC_004065.1 + 217066 0.66 0.979643
Target:  5'- cGUUGcCGAGAAGUuuccagCCGCCGucacgcUGGccuUCGCGu -3'
miRNA:   3'- -CGAC-GCUCUUCA------GGCGGU------ACU---AGCGC- -5'
16118 3' -54.4 NC_004065.1 + 180417 0.66 0.978987
Target:  5'- aCUGCGAGAugaacgagcGGUUCGUCAggGAcccgggcuuucucgUCGCGa -3'
miRNA:   3'- cGACGCUCU---------UCAGGCGGUa-CU--------------AGCGC- -5'
16118 3' -54.4 NC_004065.1 + 200153 0.66 0.977395
Target:  5'- uCUGCcGGGAGUUCGUCAaGAUcCGCa -3'
miRNA:   3'- cGACGcUCUUCAGGCGGUaCUA-GCGc -5'
16118 3' -54.4 NC_004065.1 + 6463 0.66 0.977395
Target:  5'- -gUGCGAGAgGGUCuCGCUcgcGUuGUCGCGa -3'
miRNA:   3'- cgACGCUCU-UCAG-GCGG---UAcUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 213399 0.66 0.97497
Target:  5'- cCUGCacuAGggGUugCCGCCGaagaGAUCGCGu -3'
miRNA:   3'- cGACGc--UCuuCA--GGCGGUa---CUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 103708 0.66 0.97497
Target:  5'- gGCgGCGGGGAGcgccuggCgGgCGUGAUCGUGa -3'
miRNA:   3'- -CGaCGCUCUUCa------GgCgGUACUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 115144 0.66 0.97497
Target:  5'- --aGgGAGAGGUcaCCGCCAUcGUCGuCGg -3'
miRNA:   3'- cgaCgCUCUUCA--GGCGGUAcUAGC-GC- -5'
16118 3' -54.4 NC_004065.1 + 1003 0.67 0.972361
Target:  5'- cGCUGCGGGAGG-CCGa-GUG--CGCGa -3'
miRNA:   3'- -CGACGCUCUUCaGGCggUACuaGCGC- -5'
16118 3' -54.4 NC_004065.1 + 194863 0.67 0.96956
Target:  5'- cGgUGCcAGGAGUCaCGgCGaucUGAUCGCGg -3'
miRNA:   3'- -CgACGcUCUUCAG-GCgGU---ACUAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 25500 0.67 0.96956
Target:  5'- gGCgucugGCGAccacGAcGGUCuCGCCGUGcgCGCGc -3'
miRNA:   3'- -CGa----CGCU----CU-UCAG-GCGGUACuaGCGC- -5'
16118 3' -54.4 NC_004065.1 + 167530 0.67 0.96956
Target:  5'- gGCUGUGGuagcGggGUCCuugGUgGUGAUgGCGg -3'
miRNA:   3'- -CGACGCU----CuuCAGG---CGgUACUAgCGC- -5'
16118 3' -54.4 NC_004065.1 + 101145 0.67 0.96956
Target:  5'- --cGCGAGccGUucauggUCGCCAUGAaaUCGCGc -3'
miRNA:   3'- cgaCGCUCuuCA------GGCGGUACU--AGCGC- -5'
16118 3' -54.4 NC_004065.1 + 143450 0.67 0.966563
Target:  5'- aCUGCGAcGAGGUgCCGCUcUGcgucGUCGUGa -3'
miRNA:   3'- cGACGCU-CUUCA-GGCGGuAC----UAGCGC- -5'
16118 3' -54.4 NC_004065.1 + 224047 0.67 0.966563
Target:  5'- uCUGCGGGucgucGUCCGgCA-GGUCGCu -3'
miRNA:   3'- cGACGCUCuu---CAGGCgGUaCUAGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.