miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16118 5' -56.6 NC_004065.1 + 208887 0.66 0.942668
Target:  5'- -gCGCgGUgACGGacugaGUUCUCCggGCg -3'
miRNA:   3'- uaGCGgCAgUGCCg----CAAGAGGaaCGa -5'
16118 5' -56.6 NC_004065.1 + 90012 0.66 0.938099
Target:  5'- --aGCCGUCgcuucucgGCGGCGUcagCUCCacGCUc -3'
miRNA:   3'- uagCGGCAG--------UGCCGCAa--GAGGaaCGA- -5'
16118 5' -56.6 NC_004065.1 + 62701 0.66 0.938099
Target:  5'- gGUCGCgGUCuuGGgGUagCUCCUgcgGCg -3'
miRNA:   3'- -UAGCGgCAGugCCgCAa-GAGGAa--CGa -5'
16118 5' -56.6 NC_004065.1 + 35330 0.66 0.933304
Target:  5'- -aCGCCGUC-CGGUGUUUcUCUUGaCg -3'
miRNA:   3'- uaGCGGCAGuGCCGCAAGaGGAAC-Ga -5'
16118 5' -56.6 NC_004065.1 + 91791 0.66 0.928281
Target:  5'- cGUCGuCCGcCAUGGCGacCUCCccGCa -3'
miRNA:   3'- -UAGC-GGCaGUGCCGCaaGAGGaaCGa -5'
16118 5' -56.6 NC_004065.1 + 128921 0.66 0.92828
Target:  5'- -gCGCgGuUCGCGGCGUUCgCCaagGCg -3'
miRNA:   3'- uaGCGgC-AGUGCCGCAAGaGGaa-CGa -5'
16118 5' -56.6 NC_004065.1 + 189163 0.66 0.923029
Target:  5'- -gCGCCGUUugGGCGUguguaaaUCCUUuaGUa -3'
miRNA:   3'- uaGCGGCAGugCCGCAag-----AGGAA--CGa -5'
16118 5' -56.6 NC_004065.1 + 118302 0.66 0.923029
Target:  5'- cAUCGUCcUCAuCGGCGUUCUCgUcGCc -3'
miRNA:   3'- -UAGCGGcAGU-GCCGCAAGAGgAaCGa -5'
16118 5' -56.6 NC_004065.1 + 148433 0.66 0.923029
Target:  5'- cAUgGUCGcCugGGCGcguugggUCUCCUUGUa -3'
miRNA:   3'- -UAgCGGCaGugCCGCa------AGAGGAACGa -5'
16118 5' -56.6 NC_004065.1 + 141940 0.66 0.91755
Target:  5'- uAUCGCCGUU-CGGgGUUgUCUgUGCg -3'
miRNA:   3'- -UAGCGGCAGuGCCgCAAgAGGaACGa -5'
16118 5' -56.6 NC_004065.1 + 69906 0.66 0.91755
Target:  5'- -aCGCCGU--CGGUGUUCUCCUc--- -3'
miRNA:   3'- uaGCGGCAguGCCGCAAGAGGAacga -5'
16118 5' -56.6 NC_004065.1 + 188977 0.67 0.911843
Target:  5'- cGUCGCCG-CGCGGCccgagCUCUgcgGCUu -3'
miRNA:   3'- -UAGCGGCaGUGCCGcaa--GAGGaa-CGA- -5'
16118 5' -56.6 NC_004065.1 + 168648 0.67 0.911843
Target:  5'- --aGCCGgCGCGGCGacgucgUCUCgUUGCc -3'
miRNA:   3'- uagCGGCaGUGCCGCa-----AGAGgAACGa -5'
16118 5' -56.6 NC_004065.1 + 199010 0.67 0.911843
Target:  5'- uUCGCCGUCAcCGGCc-UCUCCa---- -3'
miRNA:   3'- uAGCGGCAGU-GCCGcaAGAGGaacga -5'
16118 5' -56.6 NC_004065.1 + 183154 0.67 0.911259
Target:  5'- cUCGCCGUCACGGCcaggaUCUgguuggucagguaCCUgggGCa -3'
miRNA:   3'- uAGCGGCAGUGCCGca---AGA-------------GGAa--CGa -5'
16118 5' -56.6 NC_004065.1 + 199335 0.67 0.899753
Target:  5'- cUCGaCGUCGCGaCGgaccagCUCCUUGCUc -3'
miRNA:   3'- uAGCgGCAGUGCcGCaa----GAGGAACGA- -5'
16118 5' -56.6 NC_004065.1 + 101440 0.67 0.893375
Target:  5'- gGUCGCCGcCgGCGGaccCGUUCUCCUcGUc -3'
miRNA:   3'- -UAGCGGCaG-UGCC---GCAAGAGGAaCGa -5'
16118 5' -56.6 NC_004065.1 + 153974 0.67 0.891419
Target:  5'- -gCGCCGUCGCGGuCGUcgugaucguugucgUCUCUgucgUGUUc -3'
miRNA:   3'- uaGCGGCAGUGCC-GCA--------------AGAGGa---ACGA- -5'
16118 5' -56.6 NC_004065.1 + 58228 0.67 0.886778
Target:  5'- cGUCGCCGcgCACGaaGggCUCCUcGCUg -3'
miRNA:   3'- -UAGCGGCa-GUGCcgCaaGAGGAaCGA- -5'
16118 5' -56.6 NC_004065.1 + 171442 0.67 0.886778
Target:  5'- -cCGCCGUCGuCGGCGagCUCauccGCUg -3'
miRNA:   3'- uaGCGGCAGU-GCCGCaaGAGgaa-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.