miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1612 3' -57.4 NC_001347.2 + 34291 0.66 0.943954
Target:  5'- -cCGCAuGGGAaaguaCGGuGucGCCACCGUUGa -3'
miRNA:   3'- caGCGUuUCCUg----GCC-C--UGGUGGCAGC- -5'
1612 3' -57.4 NC_001347.2 + 143491 0.66 0.939554
Target:  5'- cUCGCGccagccGGACCGGGcgGCCuucuaccguACCGUCc -3'
miRNA:   3'- cAGCGUuu----CCUGGCCC--UGG---------UGGCAGc -5'
1612 3' -57.4 NC_001347.2 + 82769 0.66 0.939554
Target:  5'- aGUCGCGAAGGcCCGcGGGgucuuuuuUCACCGa-- -3'
miRNA:   3'- -CAGCGUUUCCuGGC-CCU--------GGUGGCagc -5'
1612 3' -57.4 NC_001347.2 + 135806 0.66 0.934938
Target:  5'- -cCGCGGcggguGGACCGGGAa-GCCGgCGg -3'
miRNA:   3'- caGCGUUu----CCUGGCCCUggUGGCaGC- -5'
1612 3' -57.4 NC_001347.2 + 128665 0.66 0.934938
Target:  5'- -aCGCGcccgugccGCCGGcGACCGCCGUCu -3'
miRNA:   3'- caGCGUuucc----UGGCC-CUGGUGGCAGc -5'
1612 3' -57.4 NC_001347.2 + 85002 0.66 0.930104
Target:  5'- gGUCGCAGuGGAaaaCGcGACCGCCGg-- -3'
miRNA:   3'- -CAGCGUUuCCUg--GCcCUGGUGGCagc -5'
1612 3' -57.4 NC_001347.2 + 135925 0.67 0.914293
Target:  5'- -aCGgAcGGGaACCGGGACC-CCGgugCGg -3'
miRNA:   3'- caGCgUuUCC-UGGCCCUGGuGGCa--GC- -5'
1612 3' -57.4 NC_001347.2 + 13523 0.67 0.914293
Target:  5'- -cCGCcGGGcGGCCcGGGCCGCCGUg- -3'
miRNA:   3'- caGCGuUUC-CUGGcCCUGGUGGCAgc -5'
1612 3' -57.4 NC_001347.2 + 202777 0.67 0.914293
Target:  5'- -gCGCu--GGuACUGGGuuguuCCACCGUCa -3'
miRNA:   3'- caGCGuuuCC-UGGCCCu----GGUGGCAGc -5'
1612 3' -57.4 NC_001347.2 + 208346 0.67 0.902669
Target:  5'- gGUgGCAGAGGGaggUCaGGGCCACCGaUCc -3'
miRNA:   3'- -CAgCGUUUCCU---GGcCCUGGUGGC-AGc -5'
1612 3' -57.4 NC_001347.2 + 190045 0.68 0.87689
Target:  5'- -cCGCuc--GACgGGGACCGCCGcCGu -3'
miRNA:   3'- caGCGuuucCUGgCCCUGGUGGCaGC- -5'
1612 3' -57.4 NC_001347.2 + 124760 0.68 0.84793
Target:  5'- -aCGCGGAGGACagcaaGGccGCCGCCGUgGg -3'
miRNA:   3'- caGCGUUUCCUGg----CCc-UGGUGGCAgC- -5'
1612 3' -57.4 NC_001347.2 + 152032 0.69 0.824316
Target:  5'- --gGCAaagaaGAGGGCgCGGaaACCACCGUCGg -3'
miRNA:   3'- cagCGU-----UUCCUG-GCCc-UGGUGGCAGC- -5'
1612 3' -57.4 NC_001347.2 + 44585 0.69 0.799268
Target:  5'- uGUCGUGAcaAGGGCUgaGGGACCuCUGUCu -3'
miRNA:   3'- -CAGCGUU--UCCUGG--CCCUGGuGGCAGc -5'
1612 3' -57.4 NC_001347.2 + 29285 0.69 0.799268
Target:  5'- cGUCGCAAAacgcuacuGGcuCCGGGACUAUCGUg- -3'
miRNA:   3'- -CAGCGUUU--------CCu-GGCCCUGGUGGCAgc -5'
1612 3' -57.4 NC_001347.2 + 78851 0.69 0.799268
Target:  5'- -aCGCAucaAGGGGCCGaagaGGCCAUCGUCu -3'
miRNA:   3'- caGCGU---UUCCUGGCc---CUGGUGGCAGc -5'
1612 3' -57.4 NC_001347.2 + 197127 0.7 0.790634
Target:  5'- -cCGCu--GGAacUCGGGcCCGCCGUCGu -3'
miRNA:   3'- caGCGuuuCCU--GGCCCuGGUGGCAGC- -5'
1612 3' -57.4 NC_001347.2 + 40682 0.7 0.745661
Target:  5'- gGUUGCGcuGGGGCCGGGGCUguucgcGCCG-CGu -3'
miRNA:   3'- -CAGCGUu-UCCUGGCCCUGG------UGGCaGC- -5'
1612 3' -57.4 NC_001347.2 + 112557 0.71 0.717523
Target:  5'- -cUGCGAcuGACCacGGuGACCACCGUCGu -3'
miRNA:   3'- caGCGUUucCUGG--CC-CUGGUGGCAGC- -5'
1612 3' -57.4 NC_001347.2 + 193097 0.72 0.679111
Target:  5'- cGUCGCAAGGGcuGCuCGGcGGCCACggCGUCu -3'
miRNA:   3'- -CAGCGUUUCC--UG-GCC-CUGGUG--GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.