Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1612 | 3' | -57.4 | NC_001347.2 | + | 97599 | 0.73 | 0.620579 |
Target: 5'- -aCGUGucuGGGGCCGGuGcuGCCGCCGUCGu -3' miRNA: 3'- caGCGUu--UCCUGGCC-C--UGGUGGCAGC- -5' |
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1612 | 3' | -57.4 | NC_001347.2 | + | 73700 | 0.74 | 0.533704 |
Target: 5'- -aCGCGAgaaGGGGCCGGGguccgcgggcACCGCCGcCGg -3' miRNA: 3'- caGCGUU---UCCUGGCCC----------UGGUGGCaGC- -5' |
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1612 | 3' | -57.4 | NC_001347.2 | + | 195658 | 0.74 | 0.571949 |
Target: 5'- uGUCGCAcgcccGAGGAuCUGGcGGCCGCCGgCGg -3' miRNA: 3'- -CAGCGU-----UUCCU-GGCC-CUGGUGGCaGC- -5' |
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1612 | 3' | -57.4 | NC_001347.2 | + | 67921 | 0.88 | 0.09151 |
Target: 5'- -aCGCGagGAGGGCCGGGACuCACCGUCGu -3' miRNA: 3'- caGCGU--UUCCUGGCCCUG-GUGGCAGC- -5' |
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1612 | 3' | -57.4 | NC_001347.2 | + | 148177 | 1.08 | 0.004626 |
Target: 5'- gGUCGCAAAGGACCGGGACCACCGUCGu -3' miRNA: 3'- -CAGCGUUUCCUGGCCCUGGUGGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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