miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1612 5' -59.5 NC_001347.2 + 65994 0.66 0.85107
Target:  5'- --aCGCGGCGuGCUgCUGCUcaACACCGu -3'
miRNA:   3'- uagGUGCCGC-CGA-GGCGGaaUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 67290 0.66 0.85107
Target:  5'- -aCUGCGGUGGUgccUCCGCCgccucaGCCGg -3'
miRNA:   3'- uaGGUGCCGCCG---AGGCGGaaug--UGGU- -5'
1612 5' -59.5 NC_001347.2 + 196353 0.66 0.849549
Target:  5'- cUCCGCGGUGGCgucccaccauucCCGUUUggagcACGCCGa -3'
miRNA:   3'- uAGGUGCCGCCGa-----------GGCGGAa----UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 194928 0.66 0.843394
Target:  5'- -gCCugGGCGGCUcgcCCGCUUguacuuuCACUu -3'
miRNA:   3'- uaGGugCCGCCGA---GGCGGAau-----GUGGu -5'
1612 5' -59.5 NC_001347.2 + 2411 0.66 0.843394
Target:  5'- --gCGCGGCGGCUgCUGCCcgagcUGgACCGc -3'
miRNA:   3'- uagGUGCCGCCGA-GGCGGa----AUgUGGU- -5'
1612 5' -59.5 NC_001347.2 + 197260 0.66 0.843394
Target:  5'- -gCCGCGGCGGCg-CGUUauaaGCACCGu -3'
miRNA:   3'- uaGGUGCCGCCGagGCGGaa--UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 156632 0.66 0.843394
Target:  5'- -gCCGCuGGCGGCgccgCUGCCggGCcucgGCCGc -3'
miRNA:   3'- uaGGUG-CCGCCGa---GGCGGaaUG----UGGU- -5'
1612 5' -59.5 NC_001347.2 + 38391 0.66 0.835541
Target:  5'- -cCCGcCGGCGGcCUCCGUCUccgugccgcuCGCCGc -3'
miRNA:   3'- uaGGU-GCCGCC-GAGGCGGAau--------GUGGU- -5'
1612 5' -59.5 NC_001347.2 + 217683 0.66 0.827516
Target:  5'- -aCCACGGCGGCU--GCCca--ACCAg -3'
miRNA:   3'- uaGGUGCCGCCGAggCGGaaugUGGU- -5'
1612 5' -59.5 NC_001347.2 + 128978 0.66 0.819328
Target:  5'- cAUCuCGCGGaagauaccguCGGCgCCGCCUcGCAUCAu -3'
miRNA:   3'- -UAG-GUGCC----------GCCGaGGCGGAaUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 191776 0.66 0.819328
Target:  5'- gGUCCAugUGGCGGCacagCCGCag-GCGCUc -3'
miRNA:   3'- -UAGGU--GCCGCCGa---GGCGgaaUGUGGu -5'
1612 5' -59.5 NC_001347.2 + 97512 0.66 0.817671
Target:  5'- -aCCAgGGCGcGCgCCGCCgagauucgucgcUGCACCGu -3'
miRNA:   3'- uaGGUgCCGC-CGaGGCGGa-----------AUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 22403 0.66 0.813502
Target:  5'- uGUCCACGcuggcuaugcuacGCGGUUUCGCCgaguuucgcccacACACCAc -3'
miRNA:   3'- -UAGGUGC-------------CGCCGAGGCGGaa-----------UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 85291 0.67 0.802486
Target:  5'- uAUCgGCGGCGGCgaaUCGCCcggGCugCc -3'
miRNA:   3'- -UAGgUGCCGCCGa--GGCGGaa-UGugGu -5'
1612 5' -59.5 NC_001347.2 + 190525 0.67 0.802486
Target:  5'- cGUCCACagcgugacuuuGaGCGGCUcgCCGCC--GCGCCAc -3'
miRNA:   3'- -UAGGUG-----------C-CGCCGA--GGCGGaaUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 77640 0.67 0.79991
Target:  5'- cGUgCugGGCGGcCUCCGCgacauuuuauaucagUACGCCGa -3'
miRNA:   3'- -UAgGugCCGCC-GAGGCGga-------------AUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 157818 0.67 0.79991
Target:  5'- -gCCGCGGUcgccgcaguugcggGGcCUCaucgcaGCCUUGCGCCGg -3'
miRNA:   3'- uaGGUGCCG--------------CC-GAGg-----CGGAAUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 32019 0.67 0.793848
Target:  5'- uAUCUGCGGUGGCa-CGCCUgugUACcCCAa -3'
miRNA:   3'- -UAGGUGCCGCCGagGCGGA---AUGuGGU- -5'
1612 5' -59.5 NC_001347.2 + 137534 0.67 0.78419
Target:  5'- cUCUugGGCGGUUCUacggGCCUcgcuuccUGCGCUg -3'
miRNA:   3'- uAGGugCCGCCGAGG----CGGA-------AUGUGGu -5'
1612 5' -59.5 NC_001347.2 + 88613 0.68 0.739464
Target:  5'- -gCgGCGGCGGCcugcgCgGCC-UGCACCGc -3'
miRNA:   3'- uaGgUGCCGCCGa----GgCGGaAUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.