Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 88613 | 0.68 | 0.739464 |
Target: 5'- -gCgGCGGCGGCcugcgCgGCC-UGCACCGc -3' miRNA: 3'- uaGgUGCCGCCGa----GgCGGaAUGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 98051 | 0.68 | 0.720558 |
Target: 5'- -gCCGCGGCGGCagCgGCCgcgGCuuCCAu -3' miRNA: 3'- uaGGUGCCGCCGa-GgCGGaa-UGu-GGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 226978 | 0.69 | 0.680993 |
Target: 5'- uUCC-CGGCGGCggacacgcuccucUCCGUCgccguucUGCACCAu -3' miRNA: 3'- uAGGuGCCGCCG-------------AGGCGGa------AUGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 150646 | 0.69 | 0.672205 |
Target: 5'- -aCUGCGGCGGUUUCGUaccaggGCGCCAc -3' miRNA: 3'- uaGGUGCCGCCGAGGCGgaa---UGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 24421 | 0.7 | 0.60344 |
Target: 5'- cUCCGCGGCGGUggCCGUCUUGgguaGCUu -3' miRNA: 3'- uAGGUGCCGCCGa-GGCGGAAUg---UGGu -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 190398 | 0.7 | 0.60344 |
Target: 5'- uUCCgGCGGCGuGCaUCUGCCgaaACACCGu -3' miRNA: 3'- uAGG-UGCCGC-CG-AGGCGGaa-UGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 63247 | 0.7 | 0.613259 |
Target: 5'- cUCCGCGGCcGCUgcgcCCGCCguggcCACCAa -3' miRNA: 3'- uAGGUGCCGcCGA----GGCGGaau--GUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 76634 | 0.7 | 0.60344 |
Target: 5'- -gCCGCGGCGGaggccgaagCgGCCUUGCGCUc -3' miRNA: 3'- uaGGUGCCGCCga-------GgCGGAAUGUGGu -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 188026 | 0.7 | 0.623091 |
Target: 5'- cUCgGCGGCGGUUCgGCCUucucgucggUAC-CCAa -3' miRNA: 3'- uAGgUGCCGCCGAGgCGGA---------AUGuGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 74744 | 0.71 | 0.561521 |
Target: 5'- aGUCCACGGUGGUgcacacgugcagacUCuUGCCcUGCGCCGa -3' miRNA: 3'- -UAGGUGCCGCCG--------------AG-GCGGaAUGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 214633 | 0.71 | 0.526102 |
Target: 5'- cGUCCAC-GUGGCUUCGCCagcguCGCCAa -3' miRNA: 3'- -UAGGUGcCGCCGAGGCGGaau--GUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 39686 | 0.71 | 0.526102 |
Target: 5'- cGUgCACGGCGcGUgcuggcgCCGCCUUgGCGCCAc -3' miRNA: 3'- -UAgGUGCCGC-CGa------GGCGGAA-UGUGGU- -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 188906 | 0.72 | 0.507306 |
Target: 5'- uUCCACGGCccccGCUCCGgCCccgACACCu -3' miRNA: 3'- uAGGUGCCGc---CGAGGC-GGaa-UGUGGu -5' |
|||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 148211 | 1.06 | 0.002938 |
Target: 5'- cAUCCACGGCGGCUCCGCCUUACACCAa -3' miRNA: 3'- -UAGGUGCCGCCGAGGCGGAAUGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home