miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1612 5' -59.5 NC_001347.2 + 148211 1.06 0.002938
Target:  5'- cAUCCACGGCGGCUCCGCCUUACACCAa -3'
miRNA:   3'- -UAGGUGCCGCCGAGGCGGAAUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 188906 0.72 0.507306
Target:  5'- uUCCACGGCccccGCUCCGgCCccgACACCu -3'
miRNA:   3'- uAGGUGCCGc---CGAGGC-GGaa-UGUGGu -5'
1612 5' -59.5 NC_001347.2 + 214633 0.71 0.526102
Target:  5'- cGUCCAC-GUGGCUUCGCCagcguCGCCAa -3'
miRNA:   3'- -UAGGUGcCGCCGAGGCGGaau--GUGGU- -5'
1612 5' -59.5 NC_001347.2 + 39686 0.71 0.526102
Target:  5'- cGUgCACGGCGcGUgcuggcgCCGCCUUgGCGCCAc -3'
miRNA:   3'- -UAgGUGCCGC-CGa------GGCGGAA-UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 74744 0.71 0.561521
Target:  5'- aGUCCACGGUGGUgcacacgugcagacUCuUGCCcUGCGCCGa -3'
miRNA:   3'- -UAGGUGCCGCCG--------------AG-GCGGaAUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 190398 0.7 0.60344
Target:  5'- uUCCgGCGGCGuGCaUCUGCCgaaACACCGu -3'
miRNA:   3'- uAGG-UGCCGC-CG-AGGCGGaa-UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 24421 0.7 0.60344
Target:  5'- cUCCGCGGCGGUggCCGUCUUGgguaGCUu -3'
miRNA:   3'- uAGGUGCCGCCGa-GGCGGAAUg---UGGu -5'
1612 5' -59.5 NC_001347.2 + 76634 0.7 0.60344
Target:  5'- -gCCGCGGCGGaggccgaagCgGCCUUGCGCUc -3'
miRNA:   3'- uaGGUGCCGCCga-------GgCGGAAUGUGGu -5'
1612 5' -59.5 NC_001347.2 + 63247 0.7 0.613259
Target:  5'- cUCCGCGGCcGCUgcgcCCGCCguggcCACCAa -3'
miRNA:   3'- uAGGUGCCGcCGA----GGCGGaau--GUGGU- -5'
1612 5' -59.5 NC_001347.2 + 188026 0.7 0.623091
Target:  5'- cUCgGCGGCGGUUCgGCCUucucgucggUAC-CCAa -3'
miRNA:   3'- uAGgUGCCGCCGAGgCGGA---------AUGuGGU- -5'
1612 5' -59.5 NC_001347.2 + 150646 0.69 0.672205
Target:  5'- -aCUGCGGCGGUUUCGUaccaggGCGCCAc -3'
miRNA:   3'- uaGGUGCCGCCGAGGCGgaa---UGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 226978 0.69 0.680993
Target:  5'- uUCC-CGGCGGCggacacgcuccucUCCGUCgccguucUGCACCAu -3'
miRNA:   3'- uAGGuGCCGCCG-------------AGGCGGa------AUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 98051 0.68 0.720558
Target:  5'- -gCCGCGGCGGCagCgGCCgcgGCuuCCAu -3'
miRNA:   3'- uaGGUGCCGCCGa-GgCGGaa-UGu-GGU- -5'
1612 5' -59.5 NC_001347.2 + 78708 0.68 0.73005
Target:  5'- cGUCCGCuGGCGGUggaagacaaCCGCCUggugGCCAa -3'
miRNA:   3'- -UAGGUG-CCGCCGa--------GGCGGAaug-UGGU- -5'
1612 5' -59.5 NC_001347.2 + 88613 0.68 0.739464
Target:  5'- -gCgGCGGCGGCcugcgCgGCC-UGCACCGc -3'
miRNA:   3'- uaGgUGCCGCCGa----GgCGGaAUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 137534 0.67 0.78419
Target:  5'- cUCUugGGCGGUUCUacggGCCUcgcuuccUGCGCUg -3'
miRNA:   3'- uAGGugCCGCCGAGG----CGGA-------AUGUGGu -5'
1612 5' -59.5 NC_001347.2 + 32019 0.67 0.793848
Target:  5'- uAUCUGCGGUGGCa-CGCCUgugUACcCCAa -3'
miRNA:   3'- -UAGGUGCCGCCGagGCGGA---AUGuGGU- -5'
1612 5' -59.5 NC_001347.2 + 77640 0.67 0.79991
Target:  5'- cGUgCugGGCGGcCUCCGCgacauuuuauaucagUACGCCGa -3'
miRNA:   3'- -UAgGugCCGCC-GAGGCGga-------------AUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 157818 0.67 0.79991
Target:  5'- -gCCGCGGUcgccgcaguugcggGGcCUCaucgcaGCCUUGCGCCGg -3'
miRNA:   3'- uaGGUGCCG--------------CC-GAGg-----CGGAAUGUGGU- -5'
1612 5' -59.5 NC_001347.2 + 190525 0.67 0.802486
Target:  5'- cGUCCACagcgugacuuuGaGCGGCUcgCCGCC--GCGCCAc -3'
miRNA:   3'- -UAGGUG-----------C-CGCCGA--GGCGGaaUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.