Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1612 | 5' | -59.5 | NC_001347.2 | + | 150646 | 0.69 | 0.672205 |
Target: 5'- -aCUGCGGCGGUUUCGUaccaggGCGCCAc -3' miRNA: 3'- uaGGUGCCGCCGAGGCGgaa---UGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 156632 | 0.66 | 0.843394 |
Target: 5'- -gCCGCuGGCGGCgccgCUGCCggGCcucgGCCGc -3' miRNA: 3'- uaGGUG-CCGCCGa---GGCGGaaUG----UGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 157818 | 0.67 | 0.79991 |
Target: 5'- -gCCGCGGUcgccgcaguugcggGGcCUCaucgcaGCCUUGCGCCGg -3' miRNA: 3'- uaGGUGCCG--------------CC-GAGg-----CGGAAUGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 188026 | 0.7 | 0.623091 |
Target: 5'- cUCgGCGGCGGUUCgGCCUucucgucggUAC-CCAa -3' miRNA: 3'- uAGgUGCCGCCGAGgCGGA---------AUGuGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 188906 | 0.72 | 0.507306 |
Target: 5'- uUCCACGGCccccGCUCCGgCCccgACACCu -3' miRNA: 3'- uAGGUGCCGc---CGAGGC-GGaa-UGUGGu -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 190398 | 0.7 | 0.60344 |
Target: 5'- uUCCgGCGGCGuGCaUCUGCCgaaACACCGu -3' miRNA: 3'- uAGG-UGCCGC-CG-AGGCGGaa-UGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 190525 | 0.67 | 0.802486 |
Target: 5'- cGUCCACagcgugacuuuGaGCGGCUcgCCGCC--GCGCCAc -3' miRNA: 3'- -UAGGUG-----------C-CGCCGA--GGCGGaaUGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 191776 | 0.66 | 0.819328 |
Target: 5'- gGUCCAugUGGCGGCacagCCGCag-GCGCUc -3' miRNA: 3'- -UAGGU--GCCGCCGa---GGCGgaaUGUGGu -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 194928 | 0.66 | 0.843394 |
Target: 5'- -gCCugGGCGGCUcgcCCGCUUguacuuuCACUu -3' miRNA: 3'- uaGGugCCGCCGA---GGCGGAau-----GUGGu -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 196353 | 0.66 | 0.849549 |
Target: 5'- cUCCGCGGUGGCgucccaccauucCCGUUUggagcACGCCGa -3' miRNA: 3'- uAGGUGCCGCCGa-----------GGCGGAa----UGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 197260 | 0.66 | 0.843394 |
Target: 5'- -gCCGCGGCGGCg-CGUUauaaGCACCGu -3' miRNA: 3'- uaGGUGCCGCCGagGCGGaa--UGUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 214633 | 0.71 | 0.526102 |
Target: 5'- cGUCCAC-GUGGCUUCGCCagcguCGCCAa -3' miRNA: 3'- -UAGGUGcCGCCGAGGCGGaau--GUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 217683 | 0.66 | 0.827516 |
Target: 5'- -aCCACGGCGGCU--GCCca--ACCAg -3' miRNA: 3'- uaGGUGCCGCCGAggCGGaaugUGGU- -5' |
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1612 | 5' | -59.5 | NC_001347.2 | + | 226978 | 0.69 | 0.680993 |
Target: 5'- uUCC-CGGCGGCggacacgcuccucUCCGUCgccguucUGCACCAu -3' miRNA: 3'- uAGGuGCCGCCG-------------AGGCGGa------AUGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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