miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16120 3' -63.5 NC_004065.1 + 113885 0.66 0.719267
Target:  5'- gGCCCCGAGccgccGCAG-GACGccgaccagcuaccuCCGGCGAc -3'
miRNA:   3'- -CGGGGCUC-----CGUCgCUGCuc------------GGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 116013 0.66 0.718354
Target:  5'- cGCCgCgGGGGCAGCucucugccGACGGGUcuCGGUGu -3'
miRNA:   3'- -CGG-GgCUCCGUCG--------CUGCUCG--GCCGCu -5'
16120 3' -63.5 NC_004065.1 + 119713 0.66 0.718354
Target:  5'- aGCCCCGgccAGaGCuGCGAgaccgugacggcCGGGUCGcGCGAg -3'
miRNA:   3'- -CGGGGC---UC-CGuCGCU------------GCUCGGC-CGCU- -5'
16120 3' -63.5 NC_004065.1 + 148701 0.66 0.718354
Target:  5'- -aCUCGAGGCcGCGGCcaucgccaGGuuGGCGAg -3'
miRNA:   3'- cgGGGCUCCGuCGCUGc-------UCggCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 38217 0.66 0.718354
Target:  5'- aGCCCCGGGGgGGUGG-GAucccuCCGGCu- -3'
miRNA:   3'- -CGGGGCUCCgUCGCUgCUc----GGCCGcu -5'
16120 3' -63.5 NC_004065.1 + 71943 0.66 0.718354
Target:  5'- gGCCUgGucGGaGGCGACGccGCCGGUGGa -3'
miRNA:   3'- -CGGGgCu-CCgUCGCUGCu-CGGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 205424 0.66 0.718354
Target:  5'- cGCaacaCC--GGCGGCGGCGGuGgCGGCGAc -3'
miRNA:   3'- -CGg---GGcuCCGUCGCUGCU-CgGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 164450 0.66 0.718354
Target:  5'- cGCCgCGucgcgguacAGGUAcucGCGACccGCCGGCGAc -3'
miRNA:   3'- -CGGgGC---------UCCGU---CGCUGcuCGGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 219324 0.66 0.718354
Target:  5'- uCCCC-AGGUAGCGGUGAGCCaucucGGUGc -3'
miRNA:   3'- cGGGGcUCCGUCGCUGCUCGG-----CCGCu -5'
16120 3' -63.5 NC_004065.1 + 39273 0.66 0.709182
Target:  5'- cGCCaCCGuccccaucAGaacCGGCGAaugggGAGCCGGCGAa -3'
miRNA:   3'- -CGG-GGC--------UCc--GUCGCUg----CUCGGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 3544 0.66 0.709182
Target:  5'- aCCUCGAaagaaucGCAGCGGCGcuGGCagaaGGCGAg -3'
miRNA:   3'- cGGGGCUc------CGUCGCUGC--UCGg---CCGCU- -5'
16120 3' -63.5 NC_004065.1 + 92460 0.66 0.709182
Target:  5'- uGUCCCGccuuccGCGGCGAUGuGCCGGgccaGAg -3'
miRNA:   3'- -CGGGGCuc----CGUCGCUGCuCGGCCg---CU- -5'
16120 3' -63.5 NC_004065.1 + 180447 0.66 0.709182
Target:  5'- -aCCCG-GGCuuucucgucGCGAUGcacggcuacguGGCCGGCGAu -3'
miRNA:   3'- cgGGGCuCCGu--------CGCUGC-----------UCGGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 102383 0.66 0.709182
Target:  5'- cGCCCuCGGcgccgcagcGGCAGCG-CGAGCgGuGCa- -3'
miRNA:   3'- -CGGG-GCU---------CCGUCGCuGCUCGgC-CGcu -5'
16120 3' -63.5 NC_004065.1 + 183522 0.66 0.709182
Target:  5'- gGUCUCGAacGGCucgcGCGACaucuugguGAuGCCGGCGAg -3'
miRNA:   3'- -CGGGGCU--CCGu---CGCUG--------CU-CGGCCGCU- -5'
16120 3' -63.5 NC_004065.1 + 40174 0.66 0.709182
Target:  5'- aCCCCuc-GCGGCGACGAGCaGGUc- -3'
miRNA:   3'- cGGGGcucCGUCGCUGCUCGgCCGcu -5'
16120 3' -63.5 NC_004065.1 + 112557 0.66 0.709182
Target:  5'- -aCCgGuGGCGGCGAgcggccgcgGAGCCGGaCGAc -3'
miRNA:   3'- cgGGgCuCCGUCGCUg--------CUCGGCC-GCU- -5'
16120 3' -63.5 NC_004065.1 + 130090 0.66 0.708262
Target:  5'- cGCCgCCGcGGCGGUccggcgucaugGACGAagaagacGCCGGCa- -3'
miRNA:   3'- -CGG-GGCuCCGUCG-----------CUGCU-------CGGCCGcu -5'
16120 3' -63.5 NC_004065.1 + 197247 0.66 0.706419
Target:  5'- gGCCCuCGAGcgcauguuccucgaGCAGCGcuACGAGCgcaugGGCGGc -3'
miRNA:   3'- -CGGG-GCUC--------------CGUCGC--UGCUCGg----CCGCU- -5'
16120 3' -63.5 NC_004065.1 + 227037 0.66 0.699955
Target:  5'- aCCCaacaaGAGcGCGGCGACGAaGaCCGauGCGAu -3'
miRNA:   3'- cGGGg----CUC-CGUCGCUGCU-C-GGC--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.