miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16124 3' -61.3 NC_004065.1 + 89948 0.66 0.80807
Target:  5'- -gGCAUCGUCGaUCGUCUGGUUCa--- -3'
miRNA:   3'- cgCGUGGCGGC-GGCGGACCAAGcuca -5'
16124 3' -61.3 NC_004065.1 + 130665 0.66 0.80807
Target:  5'- -gGCGCCGUCGCUGCCaacgcucgUCGGGc -3'
miRNA:   3'- cgCGUGGCGGCGGCGGacca----AGCUCa -5'
16124 3' -61.3 NC_004065.1 + 170456 0.66 0.80807
Target:  5'- uGCGCagucGCUGcCCGUCGCCaucGGcUUCGGGg -3'
miRNA:   3'- -CGCG----UGGC-GGCGGCGGa--CC-AAGCUCa -5'
16124 3' -61.3 NC_004065.1 + 114876 0.66 0.80807
Target:  5'- -gGUGCCGCCgGCCGgC-GGUUcCGAGg -3'
miRNA:   3'- cgCGUGGCGG-CGGCgGaCCAA-GCUCa -5'
16124 3' -61.3 NC_004065.1 + 162521 0.66 0.807244
Target:  5'- cCGCACgaGCCGCCggGCCaGGUcucggacgggcucUCGAGa -3'
miRNA:   3'- cGCGUGg-CGGCGG--CGGaCCA-------------AGCUCa -5'
16124 3' -61.3 NC_004065.1 + 123765 0.66 0.799742
Target:  5'- gGUGCGCCGCgCGCCggucGCCUG--UCGGa- -3'
miRNA:   3'- -CGCGUGGCG-GCGG----CGGACcaAGCUca -5'
16124 3' -61.3 NC_004065.1 + 121223 0.66 0.791281
Target:  5'- cGCGgcugaACgGCCGCCacGCCaGGUUCGAc- -3'
miRNA:   3'- -CGCg----UGgCGGCGG--CGGaCCAAGCUca -5'
16124 3' -61.3 NC_004065.1 + 67609 0.66 0.791281
Target:  5'- aGCGCGgCGuCCGUCGCaccguacgGcGUUCGAGa -3'
miRNA:   3'- -CGCGUgGC-GGCGGCGga------C-CAAGCUCa -5'
16124 3' -61.3 NC_004065.1 + 31477 0.66 0.791281
Target:  5'- cCGUGCCGCgCGCgGaCCUGGUgcggcUGAGg -3'
miRNA:   3'- cGCGUGGCG-GCGgC-GGACCAa----GCUCa -5'
16124 3' -61.3 NC_004065.1 + 96853 0.66 0.791281
Target:  5'- gGCGCGCUGUCGCCGCgggcgccguuCUGGc-CGuGg -3'
miRNA:   3'- -CGCGUGGCGGCGGCG----------GACCaaGCuCa -5'
16124 3' -61.3 NC_004065.1 + 177942 0.66 0.791281
Target:  5'- -gGCGCCGCCGCUucuCCUGGgguucucgCGAa- -3'
miRNA:   3'- cgCGUGGCGGCGGc--GGACCaa------GCUca -5'
16124 3' -61.3 NC_004065.1 + 151365 0.66 0.782694
Target:  5'- cGCgGCGCCgGCCGCUGCgCUGGcggcCGAu- -3'
miRNA:   3'- -CG-CGUGG-CGGCGGCG-GACCaa--GCUca -5'
16124 3' -61.3 NC_004065.1 + 124468 0.66 0.782694
Target:  5'- gGCGCGCCguGCCGCugCGCCgGGUccaGGGc -3'
miRNA:   3'- -CGCGUGG--CGGCG--GCGGaCCAag-CUCa -5'
16124 3' -61.3 NC_004065.1 + 113307 0.66 0.782694
Target:  5'- gGCGaCGCCGCuCGCgCGCC-GGacgCGGGa -3'
miRNA:   3'- -CGC-GUGGCG-GCG-GCGGaCCaa-GCUCa -5'
16124 3' -61.3 NC_004065.1 + 199157 0.66 0.780094
Target:  5'- gGCGCucgaacCCGCCGUCGacaggCUGGUcgucgucggcuucgUCGAGg -3'
miRNA:   3'- -CGCGu-----GGCGGCGGCg----GACCA--------------AGCUCa -5'
16124 3' -61.3 NC_004065.1 + 99856 0.66 0.773988
Target:  5'- uGCGCcCCGaUCGCCGCCgug--CGAGg -3'
miRNA:   3'- -CGCGuGGC-GGCGGCGGaccaaGCUCa -5'
16124 3' -61.3 NC_004065.1 + 163516 0.66 0.773988
Target:  5'- aCGCACaGCgauuccagCGUCGCCUGGUUCGu-- -3'
miRNA:   3'- cGCGUGgCG--------GCGGCGGACCAAGCuca -5'
16124 3' -61.3 NC_004065.1 + 189879 0.66 0.773988
Target:  5'- gGUGgACaacgagGCCGCCGUCUGGaUCGAc- -3'
miRNA:   3'- -CGCgUGg-----CGGCGGCGGACCaAGCUca -5'
16124 3' -61.3 NC_004065.1 + 170318 0.66 0.773988
Target:  5'- cGUGCGCCGCgGCCGCUcGGcgCc--- -3'
miRNA:   3'- -CGCGUGGCGgCGGCGGaCCaaGcuca -5'
16124 3' -61.3 NC_004065.1 + 53235 0.66 0.773988
Target:  5'- gGCGCACgCGCC-UCGCCUcaaaccuuggGGcgCGAGg -3'
miRNA:   3'- -CGCGUG-GCGGcGGCGGA----------CCaaGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.