miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16124 5' -56.5 NC_004065.1 + 202968 0.66 0.961812
Target:  5'- gUCGCCUGUACg---GGCGGaGGugGGGg -3'
miRNA:   3'- -AGUGGGCGUGgacaCUGUC-CUugCCC- -5'
16124 5' -56.5 NC_004065.1 + 110957 0.66 0.961812
Target:  5'- -uGCCgCGCACC-GUG-CAGcugaGGACGGGu -3'
miRNA:   3'- agUGG-GCGUGGaCACuGUC----CUUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 203014 0.66 0.961812
Target:  5'- -aGCCCGuUACCg--GACGGuAGCGGGu -3'
miRNA:   3'- agUGGGC-GUGGacaCUGUCcUUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 202124 0.66 0.961812
Target:  5'- cCACCCacuCGCCcGUcGGCAGGAuCGGa -3'
miRNA:   3'- aGUGGGc--GUGGaCA-CUGUCCUuGCCc -5'
16124 5' -56.5 NC_004065.1 + 110830 0.66 0.961812
Target:  5'- -uGCCagGCACCaGUG-CGGGGcGCGGGc -3'
miRNA:   3'- agUGGg-CGUGGaCACuGUCCU-UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 135121 0.66 0.958378
Target:  5'- cUCACCauCACCg--GGCGGGcgcGGCGGGu -3'
miRNA:   3'- -AGUGGgcGUGGacaCUGUCC---UUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 193787 0.66 0.958378
Target:  5'- -aGCUCGCGCuCUGUGACAGaGuuucugugauGCGGc -3'
miRNA:   3'- agUGGGCGUG-GACACUGUC-Cu---------UGCCc -5'
16124 5' -56.5 NC_004065.1 + 204448 0.66 0.958378
Target:  5'- cUCAgCCGCcUCUGgaugaUGAuCAGGcGCGGGg -3'
miRNA:   3'- -AGUgGGCGuGGAC-----ACU-GUCCuUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 122872 0.66 0.954738
Target:  5'- cCACCUGCgagcuGCCcagcagaugGUGGCgguaGGGGAUGGGg -3'
miRNA:   3'- aGUGGGCG-----UGGa--------CACUG----UCCUUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 148595 0.66 0.954738
Target:  5'- aUC-CCCGUccaguucuccGCCgggGACgAGGGACGGGc -3'
miRNA:   3'- -AGuGGGCG----------UGGacaCUG-UCCUUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 57780 0.66 0.954362
Target:  5'- cCGCCUuacgagGgGCCguucGUGACGGGAggacccgACGGGg -3'
miRNA:   3'- aGUGGG------CgUGGa---CACUGUCCU-------UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 28537 0.66 0.950888
Target:  5'- uUCACCgCGgGCCgucggGUcGAcCGGGAucucGCGGGg -3'
miRNA:   3'- -AGUGG-GCgUGGa----CA-CU-GUCCU----UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 62449 0.66 0.950888
Target:  5'- gUCACUCuuggcguuggaaGCACCggcgacGGCAGGAGCGGc -3'
miRNA:   3'- -AGUGGG------------CGUGGaca---CUGUCCUUGCCc -5'
16124 5' -56.5 NC_004065.1 + 229655 0.66 0.950888
Target:  5'- -gGCCgGCGgCaGUGGCAGGugggcguCGGGg -3'
miRNA:   3'- agUGGgCGUgGaCACUGUCCuu-----GCCC- -5'
16124 5' -56.5 NC_004065.1 + 26354 0.66 0.946825
Target:  5'- gUCAUCgGCGCUggcgacgGcGGCGGGGauACGGGg -3'
miRNA:   3'- -AGUGGgCGUGGa------CaCUGUCCU--UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 200008 0.66 0.946825
Target:  5'- gUCACCacCGCGCCgGUGACGGucGCGc- -3'
miRNA:   3'- -AGUGG--GCGUGGaCACUGUCcuUGCcc -5'
16124 5' -56.5 NC_004065.1 + 60921 0.66 0.946407
Target:  5'- -gGCCCGCGUCUGU--CAGGAcguggccaagaagACGGGu -3'
miRNA:   3'- agUGGGCGUGGACAcuGUCCU-------------UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 161814 0.66 0.944284
Target:  5'- cUCACCCGCugagacagguaaguCUUGU-ACAGcGGCGGGg -3'
miRNA:   3'- -AGUGGGCGu-------------GGACAcUGUCcUUGCCC- -5'
16124 5' -56.5 NC_004065.1 + 55944 0.66 0.942547
Target:  5'- -aAgCCGCACUUgGUGAgCAGGugcagcACGGGg -3'
miRNA:   3'- agUgGGCGUGGA-CACU-GUCCu-----UGCCC- -5'
16124 5' -56.5 NC_004065.1 + 43155 0.66 0.942547
Target:  5'- aCACgCGCACggacGGCGGGAACGGc -3'
miRNA:   3'- aGUGgGCGUGgacaCUGUCCUUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.